Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015375.1 Corchorus capsularis cultivar CVL-1 contig15396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69454

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4255--4280
5
5.2
5
100
0
52
61
19
0
19
1.35
4478--4519
20
2.1
21
86
8
61
57
7
7
28
1.52
7124--7148
8
3.1
8
100
0
50
60
12
28
0
1.32
9968--10006
11
3.6
11
86
3
53
28
53
10
7
1.62
11810--11842
3
11.0
3
87
12
50
66
0
33
0
0.92
11802--11842
12
3.5
13
84
15
54
63
0
36
0
0.95
14388--14431
11
4.0
11
82
8
54
50
18
11
20
1.77
15448--15526
41
1.9
41
92
0
131
43
16
13
26
1.86
15813--15890
33
2.5
30
80
13
95
43
10
17
28
1.82
25255--25334
27
2.9
28
90
3
128
11
32
18
37
1.87
27319--27360
15
2.8
15
88
0
57
54
11
2
30
1.49
36038--36146
16
6.8
16
79
12
125
33
39
18
8
1.80
36030--36146
32
3.7
31
89
4
164
34
39
18
7
1.80
36030--36146
48
2.4
48
81
13
143
34
39
18
7
1.80
36672--36753
42
2.0
42
95
0
146
39
19
4
36
1.73
36978--37078
7
12.9
8
69
24
56
36
36
19
6
1.79
36993--37071
16
4.9
16
83
6
97
37
35
18
7
1.80
37009--37117
54
2.0
55
84
8
143
38
36
17
7
1.78
38599--38648
18
2.8
18
84
6
57
22
42
26
10
1.84
38620--38672
18
2.9
18
82
0
61
24
39
22
13
1.90
39910--39964
15
3.7
14
85
7
65
41
25
23
9
1.83
42723--43118
201
2.0
200
93
2
688
17
18
14
49
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45549--45646
48
2.0
48
96
0
178
24
11
15
48
1.77
46740--46777
19
1.9
19
89
5
58
28
13
7
50
1.69
49941--49976
18
2.1
17
94
5
63
11
16
8
63
1.49
50999--51044
24
2.0
23
95
4
83
45
8
8
36
1.66
51002--51053
22
2.3
23
86
6
70
42
7
13
36
1.73
56032--56067
18
2.1
17
94
5
63
11
16
8
63
1.49
59758--59792
16
2.2
16
100
0
70
45
17
25
11
1.81
62036--62167
70
1.9
70
95
0
237
46
16
20
15
1.83
62912--62946
16
2.2
16
100
0
70
45
17
25
11
1.81
64671--64707
17
2.2
17
95
0
65
27
13
37
21
1.91
66392--66440
24
2.0
24
92
0
80
28
14
18
38
1.90

Tables:   1

The End!