Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015376.1 Corchorus capsularis cultivar CVL-1 contig15397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71339

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8153--8200
3
16.0
3
100
0
96
33
0
0
66
0.92
9271--9304
3
11.3
3
100
0
68
32
0
0
67
0.91
11049--11179
66
2.0
66
93
3
228
22
9
12
56
1.63
12148--12186
20
2.0
20
85
10
53
56
10
2
30
1.46
12947--13212
75
3.5
75
94
2
462
35
18
6
40
1.75
26569--26788
118
1.9
117
95
0
395
35
18
18
27
1.94
31979--32027
15
3.1
15
79
5
53
36
12
10
40
1.77
36220--36251
3
10.7
3
100
0
64
65
0
0
34
0.93
36490--36528
15
2.6
15
91
0
60
10
76
0
12
1.01
36815--36891
38
2.0
38
100
0
154
32
33
5
28
1.79
45720--45948
72
3.2
72
82
4
275
24
26
10
39
1.87
46809--46838
15
2.0
15
93
0
51
0
20
3
76
0.92
48512--48537
12
2.2
12
100
0
52
26
15
0
57
1.38
54056--54097
20
2.0
21
95
4
77
23
19
23
33
1.97
68305--68376
37
1.9
37
100
0
144
34
13
11
40
1.81
68588--68633
21
2.2
21
96
0
83
19
21
8
50
1.75

Tables:   1

The End!