Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015379.1 Corchorus capsularis cultivar CVL-1 contig15400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1820
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:610 original size:17 final size:17

Alignment explanation


    Indices: 585--618  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        575 CACCCTTCTT

                             
        585 GAAAATTCAAAAATTCA
          1 GAAAATTCAAAAATTCA

                *            
        602 GAAACTTCAAAAATTCA
          1 GAAAATTCAAAAATTCA

        619 TAGCCGATTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.56, C:0.15, G:0.06, T:0.24


Consensus pattern (17 bp):   
GAAAATTCAAAAATTCA

Found at i:713 original size:5 final size:5

Alignment explanation


    Indices: 697--725  Score: 51
    Period size: 5  Copynumber: 6.0  Consensus size: 5

        687 ATCGAAAAAT

                                               
        697 ATAAA A-AAA ATAAA ATAAA ATAAA ATAAA
          1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA

        726 TTTTCGACCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   4    4  0.17
   5   19  0.83

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (5 bp):   
ATAAA
Done.