Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015381.1 Corchorus capsularis cultivar CVL-1 contig15402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31701

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2529--2555
2
13.5
2
100
0
54
51
0
0
48
1.00
3462--3525
32
2.0
32
90
0
101
40
29
15
14
1.86
5849--6018
22
7.7
22
69
5
69
36
12
11
39
1.80
6082--6150
22
3.1
22
85
4
86
40
13
11
34
1.80
6139--6218
23
3.5
23
82
1
99
38
12
6
42
1.68
6117--6218
45
2.3
46
84
3
127
38
12
8
40
1.75
6248--6387
22
6.4
22
67
15
76
33
10
10
45
1.72
6554--6637
22
3.8
22
71
16
66
36
11
13
38
1.81
6760--6807
22
2.2
22
88
0
69
43
20
4
31
1.71
6907--6955
22
2.2
22
85
0
62
42
24
6
26
1.78
6962--7046
22
3.9
22
73
3
73
35
15
11
37
1.84
7212--7249
20
2.0
20
85
15
53
63
5
5
26
1.37
7567--7627
32
1.9
32
83
9
81
49
3
16
31
1.62
9514--9542
2
14.5
2
100
0
58
51
0
0
48
1.00
9763--9819
27
2.3
25
88
11
82
59
14
3
22
1.50
10325--10391
34
1.9
34
87
3
98
53
8
14
22
1.69
15427--15459
2
17.5
2
87
12
52
51
0
0
48
1.00
16144--16208
30
2.1
31
88
2
96
27
20
4
47
1.69
16869--16906
19
2.0
20
85
15
53
28
5
2
63
1.30
17072--17156
22
3.9
22
74
10
84
35
10
16
37
1.83
17195--17242
22
2.2
22
85
7
62
25
4
22
47
1.69
17274--17316
22
2.0
22
86
9
61
41
9
18
30
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17307--17403
22
4.4
22
77
10
90
34
8
18
39
1.81
17366--17605
22
10.7
22
68
15
93
42
8
13
35
1.75
17616--17668
22
2.5
22
87
3
81
45
9
9
35
1.69
24964--25044
31
2.5
31
79
13
85
51
20
4
22
1.66

Tables:   1

The End!