Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015382.1 Corchorus capsularis cultivar CVL-1 contig15403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21635

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1827--1861
16
2.2
16
89
0
52
31
14
17
37
1.89
6697--6814
59
2.0
59
100
0
236
49
13
16
20
1.80
6994--7059
31
2.1
31
83
5
80
31
18
3
46
1.64
7365--7446
22
3.8
21
78
13
78
43
8
12
35
1.72
7637--7708
22
3.3
22
74
18
78
45
8
15
30
1.75
7645--7730
22
3.9
22
75
3
57
45
6
18
29
1.75
7761--7824
25
2.6
25
85
4
78
37
4
14
43
1.66
7786--8000
22
9.7
22
68
14
95
35
12
13
38
1.83
8026--8073
22
2.2
22
85
3
62
54
4
14
27
1.59
8252--8308
2
30.0
2
81
10
66
43
5
0
50
1.24
8254--8307
28
2.0
27
89
7
83
42
5
0
51
1.25
9821--9859
19
2.1
19
95
0
69
58
7
5
28
1.47
9953--10013
31
2.0
31
93
0
104
36
19
11
32
1.88
10969--11007
19
2.1
19
90
0
60
43
10
5
41
1.61
11137--11172
18
2.0
18
88
0
54
33
27
22
16
1.95
12861--12886
2
13.0
2
100
0
52
50
0
0
50
1.00
15982--16043
30
2.0
31
93
3
108
46
3
16
33
1.63
16073--16115
2
21.0
2
90
4
68
48
0
4
46
1.22
19060--19182
22
5.6
21
77
11
113
41
13
10
34
1.78
19040--19180
44
3.2
44
81
0
156
45
12
10
31
1.75
19060--19228
44
3.9
44
78
6
157
42
11
11
35
1.76
19054--19228
22
8.0
22
71
12
101
42
10
12
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19360--19602
22
11.0
23
76
12
154
32
9
17
39
1.83
19460--19602
65
2.2
66
81
9
168
34
11
15
38
1.83

Tables:   1

The End!