Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015386.1 Corchorus capsularis cultivar CVL-1 contig15407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20219
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:3253 original size:18 final size:17

Alignment explanation


    Indices: 3221--3255  Score: 52
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       3211 AATTAACTCT

                     *       
       3221 TTTTTTTTTTCTTTTTC
          1 TTTTTTTTTCCTTTTTC

                              
       3238 TTTTTTTTTCCATTTTTC
          1 TTTTTTTTTCC-TTTTTC

       3256 AGGACAAGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17   10  0.62
  18    6  0.38

ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83


Consensus pattern (17 bp):   
TTTTTTTTTCCTTTTTC
Done.