Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015389.1 Corchorus capsularis cultivar CVL-1 contig15410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75869

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
569--625
28
2.0
28
100
0
114
50
14
10
24
1.73
745--848
50
2.1
50
96
0
190
48
8
8
34
1.65
22134--22187
3
17.7
3
96
3
99
66
0
33
0
0.92
23091--23115
7
3.6
7
100
0
50
40
0
32
28
1.57
25290--25348
31
1.9
31
85
0
82
33
16
3
45
1.64
26090--26302
109
2.0
108
88
5
326
34
8
9
47
1.67
26362--26394
17
1.9
17
93
0
57
45
3
15
36
1.61
26641--26699
31
1.9
31
92
0
100
33
27
23
15
1.95
26650--26752
53
1.9
53
88
0
152
35
26
20
17
1.94
27027--27089
32
2.0
32
100
0
126
33
15
25
25
1.95
27868--27914
6
7.7
6
90
9
69
0
0
14
85
0.61
27868--27914
13
3.8
12
86
13
69
0
0
14
85
0.61
27871--27912
7
6.4
7
94
5
63
0
0
11
88
0.53
34205--34238
16
2.1
16
100
0
68
29
17
41
11
1.85
37832--37890
31
1.9
31
85
0
82
38
18
10
32
1.84
44765--44794
10
2.9
10
95
5
51
73
10
0
16
1.09
51983--52033
22
2.3
21
78
18
50
37
7
0
54
1.29
53295--53917
22
27.9
22
66
19
158
38
10
16
35
1.82
53725--53918
88
2.2
87
79
6
203
44
9
12
33
1.75
53999--54046
19
2.5
19
89
3
69
45
10
16
27
1.80
53999--54407
22
18.8
22
69
11
157
38
9
16
35
1.81
54558--54601
22
2.0
22
86
8
63
38
4
13
43
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56130--56185
2
28.5
2
79
16
64
50
0
5
44
1.25
56130--56186
19
2.8
20
87
12
80
50
0
5
43
1.24
62385--62413
15
1.9
15
100
0
58
20
31
6
41
1.79
64371--64532
60
2.7
59
79
7
157
36
16
19
27
1.93
64575--64734
60
2.7
59
83
6
191
30
18
16
35
1.93
64574--64734
59
2.7
58
83
6
191
30
18
16
34
1.93
64752--64793
2
21.5
2
90
4
68
52
0
0
47
1.00
65949--66048
2
50.0
2
83
0
128
2
5
43
50
1.35
71104--71146
11
3.9
11
90
0
68
46
6
4
41
1.51
71100--71146
22
2.1
22
96
0
85
46
6
4
42
1.48

Tables:   1

The End!