Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015390.1 Corchorus capsularis cultivar CVL-1 contig15411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8699
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38


Found at i:2812 original size:14 final size:15

Alignment explanation


    Indices: 2785--2817  Score: 50
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       2775 TGACTAAAAA

                           
       2785 TAATATTAATTAAAT
          1 TAATATTAATTAAAT

                   *       
       2800 TAATATTCA-TAAAT
          1 TAATATTAATTAAAT

                
       2814 TAAT
          1 TAAT

       2818 TCTTAAAAAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14    9  0.53
  15    8  0.47

ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45


Consensus pattern (15 bp):   
TAATATTAATTAAAT
Done.