Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015391.1 Corchorus capsularis cultivar CVL-1 contig15412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65120

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--65
28
2.0
27
82
10
67
38
9
3
48
1.53
5695--5969
109
2.5
109
91
4
419
38
11
2
48
1.51
7219--7244
9
2.9
9
100
0
52
92
0
0
7
0.39
10532--10573
3
14.3
3
80
14
52
69
0
0
30
0.89
10582--10638
22
2.6
21
82
15
71
42
3
0
54
1.17
10582--10636
26
2.1
26
83
12
69
40
3
0
56
1.17
10990--11049
31
2.0
31
90
6
97
28
6
6
58
1.49
12937--12984
18
2.5
19
78
18
55
22
25
14
37
1.92
13575--13599
12
2.1
12
100
0
50
32
0
16
52
1.44
13812--13839
2
14.0
2
100
0
56
50
0
0
50
1.00
14666--14746
29
2.7
30
86
3
110
37
12
24
25
1.91
23157--23222
33
2.1
32
91
5
107
37
36
6
19
1.77
33335--33500
31
5.5
31
72
13
157
34
20
18
26
1.96
33339--33500
60
2.7
60
91
0
261
35
20
18
25
1.95
33533--33699
31
5.5
31
79
8
173
26
17
17
37
1.92
37432--37800
110
3.5
105
86
8
525
41
9
8
40
1.68
39912--39985
36
2.1
36
100
0
148
35
9
10
44
1.72
39953--40047
47
2.1
45
88
7
138
33
9
18
37
1.84
40730--40808
31
2.6
31
87
2
106
37
12
17
31
1.88
48531--48558
2
14.0
2
100
0
56
50
0
0
50
1.00
51676--51722
2
23.5
2
95
0
85
46
0
2
51
1.13

Tables:   1

The End!