Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015397.1 Corchorus capsularis cultivar CVL-1 contig15418, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9261

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
402--479
27
2.9
26
77
12
79
37
28
19
15
1.92
785--1032
90
2.7
89
86
4
345
32
26
15
25
1.96
2946--3188
81
2.9
84
85
4
330
32
24
13
28
1.94
3044--3408
91
4.1
90
87
3
461
33
24
14
28
1.94
2926--3392
170
2.7
178
83
7
517
33
24
13
28
1.94
3396--3608
35
6.0
35
82
2
248
34
27
15
22
1.94
3396--3608
70
3.0
71
85
5
288
34
27
15
22
1.94
3434--3629
35
5.5
36
85
4
265
35
26
15
22
1.94
3632--4080
54
8.4
54
83
4
509
32
21
17
28
1.96
3876--4021
46
3.0
46
75
14
166
31
21
17
28
1.97
3822--4021
100
2.0
100
90
0
310
32
22
17
27
1.96
3767--4069
154
2.0
154
85
2
410
31
22
17
29
1.96
3923--4091
55
3.1
55
88
0
241
32
20
16
30
1.95
4258--4302
20
2.2
20
84
4
54
66
8
8
15
1.43
5711--5746
19
1.9
18
88
5
54
33
22
2
41
1.68
7327--7365
21
1.9
19
85
10
51
43
20
10
25
1.83
8125--8158
18
1.9
18
88
5
52
85
8
2
2
0.80

Tables:   1

The End!