Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015400.1 Corchorus capsularis cultivar CVL-1 contig15421, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1765
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27


Found at i:676 original size:10 final size:10

Alignment explanation


    Indices: 661--723  Score: 71
    Period size: 10  Copynumber: 6.6  Consensus size: 10

        651 GGTTCGAAAG

                      
        661 AAGCAAGCTC
          1 AAGCAAGCTC

                      
        671 AAGCAAGCTC
          1 AAGCAAGCTC

                    *  
        681 AAGCAAAGGT-
          1 AAGC-AAGCTC

                 *    
        691 -A-C-TGCTC
          1 AAGCAAGCTC

                      
        698 AAGCAAGCTC
          1 AAGCAAGCTC

                      
        708 AAGCAAGCTC
          1 AAGCAAGCTC

                  
        718 AAGCAA
          1 AAGCAA

        724 AGGTCCTCCA


Statistics
Matches: 44,  Mismatches: 4, Indels: 10
        0.76            0.07        0.17

Matches are distributed among these distances:
   6    2  0.05
   8    2  0.05
   9    2  0.05
  10   34  0.77
  11    4  0.09

ACGTcount: A:0.41, C:0.27, G:0.21, T:0.11


Consensus pattern (10 bp):   
AAGCAAGCTC
Done.