Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015401.1 Corchorus capsularis cultivar CVL-1 contig15422, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96712

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1366--1392
8
3.4
8
100
0
54
0
11
0
88
0.50
2663--2726
25
2.6
25
82
5
76
59
10
9
20
1.58
5475--5524
25
2.0
25
100
0
100
24
12
28
36
1.91
12166--12207
20
2.1
20
95
0
75
23
19
16
40
1.91
13230--13286
28
2.0
28
89
0
87
24
19
17
38
1.93
15786--15810
2
12.5
2
100
0
50
48
0
0
52
1.00
26073--26110
18
2.2
18
90
4
60
21
36
13
28
1.91
29355--29389
14
2.8
12
87
12
52
85
0
14
0
0.59
31236--31286
21
2.4
21
83
0
66
11
31
29
27
1.92
31698--31763
28
2.4
28
87
5
91
46
22
10
19
1.80
47316--47381
10
6.0
10
70
19
51
13
48
25
12
1.77
47317--47408
23
4.2
23
81
13
113
17
47
21
13
1.81
47676--47709
15
2.4
14
90
9
52
5
5
2
85
0.83
48996--49035
10
3.7
12
75
25
52
22
5
5
67
1.30
49004--49043
20
2.0
20
90
0
62
17
5
10
67
1.37
56757--56843
7
11.9
7
69
13
50
40
1
1
57
1.14
56732--56851
50
2.4
50
86
5
163
43
0
0
55
1.11
56758--56843
31
2.9
28
75
5
82
39
1
1
58
1.13
56732--56868
50
2.9
45
75
16
91
45
0
0
53
1.11
58110--58158
25
2.0
25
84
8
64
24
0
26
48
1.51
58989--59037
25
2.0
25
87
0
71
36
16
30
16
1.91
78538--78597
31
2.0
31
83
6
79
38
11
13
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80952--81029
41
1.9
41
89
5
122
24
21
12
41
1.88
80952--81049
41
2.4
41
80
16
114
22
21
11
44
1.83
88249--88293
2
22.0
2
86
13
65
46
4
0
48
1.22
88315--88649
178
1.9
176
85
2
465
24
21
15
38
1.92
91970--91994
2
12.5
2
100
0
50
52
0
0
48
1.00
92647--92672
13
2.0
13
100
0
52
76
0
15
7
0.99
94158--94245
45
1.9
46
88
2
133
31
5
19
43
1.74
94634--94679
22
2.0
23
84
12
60
28
4
13
54
1.57
95056--95087
16
2.0
17
88
11
50
18
6
0
75
1.01

Tables:   1

The End!