Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015404.1 Corchorus capsularis cultivar CVL-1 contig15425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57545

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2931--2992
29
2.1
29
82
5
72
35
12
29
22
1.91
6241--6343
43
2.4
44
86
1
136
36
9
12
40
1.76
6219--6343
22
5.8
21
74
3
88
36
8
12
41
1.75
6410--6436
2
13.5
2
100
0
54
48
0
0
51
1.00
6542--6598
22
2.7
21
83
5
69
40
10
5
43
1.62
6614--6720
22
4.9
20
73
13
72
36
16
6
40
1.75
6610--6727
44
2.7
44
72
17
102
37
16
6
39
1.75
6857--6905
19
2.4
19
90
10
71
36
12
10
40
1.77
6823--7017
22
8.8
22
72
13
107
36
16
7
39
1.76
7067--7131
22
3.0
22
77
8
69
32
26
7
33
1.85
7178--7311
22
6.1
22
79
0
142
33
16
9
40
1.81
7207--7525
44
7.4
43
71
13
185
36
14
9
39
1.78
7274--7346
36
2.0
36
86
5
103
32
15
12
39
1.84
7310--7406
22
4.5
22
75
14
85
36
17
9
37
1.82
7487--7592
22
4.9
22
79
5
117
42
15
8
33
1.77
7423--7590
66
2.6
66
80
7
157
44
11
8
35
1.72
10711--10819
38
2.9
37
93
2
173
45
15
4
33
1.67
14301--14782
170
2.8
172
87
3
645
34
18
18
28
1.95
16550--16576
9
3.0
9
100
0
54
0
11
0
88
0.50
16869--16923
13
3.9
14
78
19
60
41
12
5
40
1.66
16868--16934
15
4.6
14
78
12
73
41
13
7
37
1.73
27071--27310
49
4.9
49
80
2
232
34
15
26
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28646--28720
34
2.3
33
81
9
82
4
6
16
73
1.20
32160--32209
21
2.4
21
79
0
64
56
2
36
6
1.36
37438--37647
93
2.3
92
75
10
212
43
12
6
37
1.68
40936--40970
18
1.9
18
88
0
52
8
8
0
82
0.83
41653--41713
25
2.4
24
78
13
68
59
14
11
14
1.62
45533--45769
119
2.0
119
99
0
465
34
12
26
26
1.92
48339--48489
74
2.0
74
83
5
189
37
17
25
19
1.93

Tables:   1

The End!