Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015405.1 Corchorus capsularis cultivar CVL-1 contig15426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41908

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1113--1186
32
2.4
31
81
2
85
39
35
16
9
1.81
1385--1868
166
2.9
166
85
3
634
30
14
16
38
1.89
2799--2825
2
13.5
2
100
0
54
48
0
0
51
1.00
7633--7671
2
19.5
2
89
0
60
51
2
0
46
1.14
7759--7819
31
1.9
32
93
3
106
29
19
3
47
1.65
7944--8349
204
2.0
201
90
3
638
35
19
18
26
1.95
8425--8462
19
1.9
19
85
15
51
31
5
0
63
1.17
8772--8809
19
2.0
20
85
15
53
28
5
2
63
1.30
8972--9135
22
7.4
22
79
10
147
32
9
19
39
1.83
9175--9304
22
6.0
22
74
10
97
34
8
20
36
1.83
9199--9561
22
16.3
22
69
16
87
38
9
16
35
1.80
9334--9432
21
4.5
22
77
15
89
41
9
14
35
1.77
9315--9561
22
11.3
22
69
12
116
40
9
15
34
1.79
9686--9850
22
7.5
22
70
14
108
43
9
12
35
1.74
9686--10247
44
12.9
43
66
14
154
39
9
13
37
1.78
9877--9955
22
3.5
22
80
13
81
36
8
13
40
1.76
9922--10114
22
8.7
22
67
15
85
34
12
14
38
1.84
10126--10246
22
5.5
22
70
6
75
44
8
12
34
1.72
10343--10381
2
19.5
2
94
0
69
46
0
2
51
1.14
12614--12685
35
2.1
35
86
5
101
29
4
31
34
1.77
12759--12783
2
12.5
2
100
0
50
52
0
0
48
1.00
14153--14277
22
5.8
21
73
3
88
36
9
12
41
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14539--14566
2
14.0
2
100
0
56
50
0
0
50
1.00
15343--15373
2
15.5
2
100
0
62
48
0
0
51
1.00
16510--16565
28
2.0
28
85
0
76
26
16
16
41
1.88
22782--22818
19
2.0
18
89
5
56
29
21
8
40
1.82
24518--24562
15
2.9
15
80
3
54
37
31
11
20
1.87
26551--26583
15
2.4
14
90
10
50
66
0
27
6
1.15
29068--29104
19
2.0
18
89
5
56
29
21
8
40
1.82
30705--30741
19
2.0
18
89
5
56
29
21
8
40
1.82
33406--33438
17
1.9
17
93
0
57
30
45
18
6
1.73
33429--33476
16
3.1
15
93
6
78
39
39
14
6
1.71
38481--38531
25
2.0
25
85
11
68
52
1
7
37
1.42
41539--41699
60
2.7
60
94
1
270
36
17
19
27
1.94
41599--41702
31
3.4
31
72
15
117
35
18
19
26
1.95
41570--41668
29
3.3
29
68
15
85
33
16
20
30
1.94
41733--41892
60
2.7
60
94
0
268
25
20
19
35
1.96

Tables:   1

The End!