Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015409.1 Corchorus capsularis cultivar CVL-1 contig15430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78197

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506--615
33
3.3
33
79
5
141
32
11
17
38
1.86
505--628
66
1.9
66
94
0
221
29
11
19
39
1.86
504--641
66
2.1
66
88
0
213
29
10
19
39
1.86
641--752
33
3.5
33
81
3
104
33
9
15
41
1.80
10163--10205
20
2.1
21
86
4
61
39
20
18
20
1.93
10846--10975
51
2.5
52
85
8
158
13
18
13
54
1.71
11477--11516
1
40.0
1
89
0
62
0
0
5
95
0.29
11469--11516
11
4.1
12
89
10
73
0
2
6
91
0.48
11469--11516
23
2.1
22
92
7
78
0
2
6
91
0.48
20823--20852
6
5.0
6
95
0
51
0
0
20
80
0.72
25158--25206
18
2.7
18
84
6
64
46
0
34
18
1.49
27143--27210
26
2.6
26
84
9
93
32
1
11
54
1.46
27220--27278
25
2.4
25
89
10
88
40
0
25
33
1.56
27513--27603
16
5.7
16
82
0
119
50
29
13
6
1.66
27514--27603
32
2.8
32
91
0
153
51
30
12
6
1.65
27742--27825
32
2.6
32
86
0
123
39
38
10
11
1.77
27769--27816
16
3.0
16
73
11
53
39
35
8
16
1.79
27759--27815
15
3.7
15
72
9
51
40
33
10
15
1.82
28178--28240
28
2.2
28
82
5
72
31
1
1
65
1.12
30625--30662
18
2.1
18
95
0
67
7
34
15
42
1.76
39961--39990
11
2.7
11
94
0
51
10
0
0
90
0.47
39963--39992
10
3.0
10
95
0
51
16
0
0
83
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40642--40712
26
2.7
27
80
4
81
19
15
25
39
1.91
44575--44626
10
5.3
9
78
15
50
78
3
15
1
0.98
45631--45749
36
3.4
35
82
13
156
28
18
6
46
1.74
45652--45759
32
3.2
32
80
14
137
28
17
6
47
1.72
45631--45759
68
1.9
68
91
3
215
28
17
6
47
1.72
45788--46187
36
10.9
36
83
3
476
24
20
9
45
1.81
46181--46439
11
23.5
11
80
6
103
24
18
9
47
1.78
46181--46441
44
5.9
44
81
4
267
24
18
9
47
1.78
46211--46441
11
21.0
11
80
5
252
26
17
9
46
1.78
46585--46717
42
3.3
42
87
5
184
25
20
10
43
1.83
46846--46875
15
2.1
14
93
6
51
16
26
10
46
1.78
52191--52240
13
3.8
13
80
17
50
42
8
12
38
1.71
52203--52239
14
2.7
14
84
16
51
43
8
16
32
1.77
55058--55415
50
7.1
50
91
1
547
36
12
28
22
1.90
55700--55768
26
2.6
27
79
4
77
20
15
26
37
1.93
57707--57756
21
2.3
23
80
16
61
74
4
20
2
1.08
58800--58839
21
1.9
21
85
10
55
22
30
7
40
1.81
66991--67037
15
3.5
13
80
19
53
21
8
0
70
1.14
67776--67934
16
10.0
15
73
16
117
31
37
20
11
1.88
67774--67936
32
5.1
32
85
3
204
31
36
20
11
1.88
67776--67933
48
3.3
47
77
15
144
31
37
20
11
1.88
67792--67918
9
15.8
8
70
21
70
29
37
21
11
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68509--68551
21
2.0
22
86
4
61
18
37
9
34
1.83
69731--69823
16
5.8
16
76
8
91
30
37
21
10
1.87
69746--69824
32
2.5
32
85
4
106
31
36
20
11
1.88
69818--69870
16
3.4
16
72
15
56
39
33
15
11
1.83
73061--73123
31
2.0
31
93
0
108
34
1
15
47
1.56
73584--73690
53
2.0
53
94
3
189
40
6
11
42
1.67
74283--74307
13
1.9
13
100
0
50
80
0
0
20
0.72
74450--74493
6
7.3
6
87
7
63
34
15
0
50
1.45
74482--75228
373
2.0
373
98
0
1440
35
10
5
48
1.61
76554--76594
17
2.4
16
84
11
55
34
21
21
21
1.97
77480--77548
31
2.2
31
94
0
120
31
15
2
49
1.60
77605--77673
31
2.2
31
89
0
102
30
17
4
47
1.67
77455--77702
125
2.0
126
95
0
444
34
12
8
45
1.71

Tables:   1

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