Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015411.1 Corchorus capsularis cultivar CVL-1 contig15432, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5560
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39


Found at i:388 original size:2 final size:2

Alignment explanation


    Indices: 381--413  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        371 GCACATGCAT

                                                             
        381 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A

        414 TATATATATA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Found at i:1767 original size:2 final size:2

Alignment explanation


    Indices: 1755--1789  Score: 61
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1745 CTGATTTTCG

                                                               
       1755 CA CA TCA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
          1 CA CA -CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA

       1790 TATATATATA


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   30  0.94
   3    2  0.06

ACGTcount: A:0.49, C:0.49, G:0.00, T:0.03


Consensus pattern (2 bp):   
CA

Done.