Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015415.1 Corchorus capsularis cultivar CVL-1 contig15436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7737

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
157--190
12
2.7
13
90
4
52
20
5
8
64
1.43
187--213
6
4.5
6
100
0
54
29
0
14
55
1.40
566--600
13
2.7
13
100
0
70
20
8
8
62
1.49
597--623
6
4.5
6
100
0
54
29
0
14
55
1.40
1063--1097
8
4.5
8
92
3
54
0
22
2
74
0.95
6673--6697
10
2.5
10
100
0
50
48
20
8
24
1.76
6941--7093
22
7.0
22
76
6
159
52
5
21
19
1.66
7001--7063
15
4.3
15
67
18
51
53
3
23
19
1.59
6922--7200
44
6.7
43
79
11
253
53
5
20
20
1.64
7029--7094
15
4.5
15
71
17
57
56
3
19
21
1.56
7051--7129
35
2.2
37
88
6
126
54
2
21
21
1.57
6903--7202
166
1.8
166
85
6
430
54
5
20
20
1.63
7296--7343
14
3.3
15
74
8
55
62
2
20
14
1.42
7310--7375
22
3.0
21
80
2
60
50
4
24
21
1.67
7399--7484
26
3.2
26
65
20
68
50
6
17
25
1.71
7369--7568
55
3.6
55
90
2
285
49
7
18
24
1.73
7534--7686
70
2.2
71
88
3
220
47
9
16
25
1.78
7579--7688
37
3.0
37
73
17
122
50
9
16
24
1.74

Tables:   1

The End!