Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015416.1 Corchorus capsularis cultivar CVL-1 contig15437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4076
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:3391 original size:13 final size:12

Alignment explanation


    Indices: 3373--3406  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       3363 ATAATGATTG

                         
       3373 TTTGCTTTATTAA
          1 TTTGCTTTA-TAA

                        
       3386 TTTGCTTTATAA
          1 TTTGCTTTATAA

             *       
       3398 TCTGCTTTA
          1 TTTGCTTTA

       3407 GATTTAGATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  12   11  0.55
  13    9  0.45

ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59


Consensus pattern (12 bp):   
TTTGCTTTATAA
Done.