Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015418.1 Corchorus capsularis cultivar CVL-1 contig15439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8927
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35


Found at i:8173 original size:12 final size:13

Alignment explanation


    Indices: 8132--8176  Score: 74
    Period size: 13  Copynumber: 3.5  Consensus size: 13

       8122 AATTATTGTT

                         
       8132 TGCTTTATTAATC
          1 TGCTTTATTAATC

                        *
       8145 TGCTTTATTAATT
          1 TGCTTTATTAATC

                         
       8158 TGCTTTA-TAATC
          1 TGCTTTATTAATC

                   
       8170 TGCTTTA
          1 TGCTTTA

       8177 GATTTAGATT


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  12   11  0.37
  13   19  0.63

ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56


Consensus pattern (13 bp):   
TGCTTTATTAATC

Found at i:8184 original size:6 final size:6

Alignment explanation


    Indices: 8173--8199  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       8163 TATAATCTGC

                                           
       8173 TTTAGA TTTAGA TTTAGA TTTAGA TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTT

       8200 GCTTTGCTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56


Consensus pattern (6 bp):   
TTTAGA

Done.