Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015425.1 Corchorus capsularis cultivar CVL-1 contig15446, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3261
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:2652 original size:33 final size:33

Alignment explanation


    Indices: 2615--2721  Score: 117
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       2605 AGCACCAGTG

                    *            *           
       2615 ACCGGCCATGCGACTTGGAGAAGTCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                      *    * *     *         
       2648 ACCGGCCACGTGACTCGAAGATGCCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                       *  *    *             
       2681 ACCGGCCACGCAACATGGACATGTCCGGCC-AC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                     
       2713 AACCGGCCA
          1 -ACCGGCCA

       2722 TCGCTAGGCG


Statistics
Matches: 60,  Mismatches: 13, Indels: 2
        0.80            0.17        0.03

Matches are distributed among these distances:
  32    2  0.03
  33   58  0.97

ACGTcount: A:0.25, C:0.38, G:0.27, T:0.09


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC
Done.