genome.fa.s15440.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015440.1 Corchorus capsularis cultivar CVL-1 contig15461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122389

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2277--2639	49	7.4	49	90	0	532	23	31	12	31	1.93
3460--3522	35	1.9	34	87	12	96	38	17	4	39	1.71
3472--3553	35	2.3	35	81	4	85	40	15	6	37	1.73
3515--3595	27	3.2	27	66	25	77	43	16	7	33	1.75
3517--3608	48	1.9	48	97	0	175	41	15	6	36	1.73
3565--3954	35	10.7	35	74	13	342	36	17	8	38	1.80
3651--3711	21	2.9	20	80	4	68	39	13	1	45	1.53
3814--3861	21	2.3	21	88	0	69	35	10	2	52	1.48
3620--3967	150	2.3	150	95	1	621	35	17	8	38	1.80
3968--4043	38	2.0	38	100	0	152	13	15	15	55	1.70
9244--9664	219	2.0	205	89	6	522	28	10	7	53	1.63
9920--10015	47	2.0	48	91	2	158	30	9	11	48	1.70
11148--11185	19	1.9	19	89	5	58	28	13	7	50	1.69
15992--16027	1	36.0	1	100	0	72	100	0	0	0	0.00
18043--18172	39	3.2	42	63	12	110	15	40	3	41	1.63
18032--18186	78	2.0	78	94	0	274	16	40	3	40	1.64
18558--18617	18	3.3	18	70	9	50	3	48	3	45	1.35
20653--20694	3	14.0	3	100	0	84	66	0	0	33	0.92
21629--21686	19	3.0	19	78	12	64	70	0	0	29	0.87
28806--28844	17	2.3	17	100	0	78	35	17	17	28	1.94
32589--32617	1	29.0	1	100	0	58	0	0	0	100	0.00
33865--33950	45	1.9	45	90	0	136	26	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40975--41007	15	2.3	15	89	5	50	60	0	21	18	1.36
54545--54656	33	3.5	31	83	8	127	40	15	10	33	1.82
56227--56260	8	4.1	8	85	7	50	23	2	14	58	1.50
57215--57296	33	2.5	34	76	9	91	12	29	37	20	1.89
59200--59277	27	2.9	27	90	5	122	42	23	17	16	1.89
62990--63082	33	2.8	33	90	3	134	22	40	25	10	1.86
64102--64126	9	2.8	9	100	0	50	84	0	0	16	0.63
69451--69555	33	3.2	33	89	2	149	23	40	26	8	1.83
70515--70547	15	2.2	15	94	0	57	27	15	6	51	1.66
73751--73791	19	2.1	20	86	4	57	78	2	17	2	0.98
76644--76668	8	3.1	8	100	0	50	24	24	16	36	1.94
86606--86647	21	2.0	20	86	4	57	26	21	11	40	1.88
86950--86979	16	1.9	15	93	6	51	43	0	13	43	1.43
91421--91568	81	1.9	78	88	7	226	41	11	13	33	1.80
93909--93933	13	1.9	13	100	0	50	40	24	20	16	1.91
93918--93961	23	1.9	23	100	0	88	47	20	13	18	1.82
95401--95489	21	4.0	21	76	17	90	41	14	14	29	1.86
95403--95456	27	2.0	27	85	0	72	37	14	18	29	1.91
100783--100808	3	8.7	3	100	0	52	69	0	0	30	0.89
101182--101211	10	3.0	10	100	0	60	20	10	10	60	1.57
104618--104651	2	17.0	2	100	0	68	50	0	0	50	1.00
107312--107342	5	6.0	5	96	3	53	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108444--108475	12	2.5	13	90	10	57	87	12	0	0	0.54
115191--115266	27	2.8	27	95	0	134	15	17	26	40	1.89
119135--119529	55	7.2	55	96	0	673	50	6	17	25	1.70
119381--119470	29	3.2	29	65	25	75	50	7	18	23	1.73
119784--120085	64	4.7	64	77	10	237	54	6	19	18	1.65
119834--120066	43	5.5	42	81	9	231	55	7	19	17	1.64
119784--120058	21	12.9	20	72	14	130	54	6	20	18	1.65
119784--120066	22	13.2	22	71	9	149	54	6	19	18	1.65
119833--120085	21	11.9	20	69	16	90	56	7	18	17	1.64
121027--121096	36	1.9	36	94	0	122	35	18	8	37	1.82

Tables:   1

The End!