Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015441.1 Corchorus capsularis cultivar CVL-1 contig15462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38923

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3008--3188
39
4.7
39
92
2
294
24
17
34
23
1.96
3199--3229
6
5.2
6
100
0
62
16
0
35
48
1.46
3825--3854
3
10.3
3
92
7
53
66
0
33
0
0.92
7524--7567
21
2.1
21
83
8
54
18
31
9
40
1.81
7624--7740
32
3.6
32
89
1
153
16
42
28
12
1.84
7878--7959
33
2.5
32
78
7
94
10
43
30
14
1.80
16374--16424
25
2.0
25
88
7
77
29
15
25
29
1.96
18082--18113
2
16.0
2
100
0
64
50
0
0
50
1.00
18380--18435
27
2.1
27
100
0
112
53
10
10
25
1.67
18423--18500
33
2.4
33
95
0
138
43
12
19
24
1.86
22516--22549
15
2.2
16
94
5
61
50
5
17
26
1.69
26399--26457
27
2.3
27
85
5
77
22
11
10
55
1.65
28785--28818
8
4.1
8
85
7
50
58
14
2
23
1.50
33760--33850
33
2.7
33
79
6
103
24
42
26
6
1.78
35810--35855
15
2.9
16
77
6
58
41
30
15
13
1.85
36462--36557
37
2.6
38
77
1
104
55
11
19
13
1.68
36631--36890
131
2.0
131
93
2
443
48
7
13
31
1.69

Tables:   1

The End!