Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015446.1 Corchorus capsularis cultivar CVL-1 contig15467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14320
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:12288 original size:3 final size:3

Alignment explanation


    Indices: 12282--12319  Score: 76
    Period size: 3  Copynumber: 12.7  Consensus size: 3

      12272 GGCCTCTCAA

                                                              
      12282 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

      12320 GTAGGGCGGC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:12567 original size:42 final size:43

Alignment explanation


    Indices: 12520--12609  Score: 137
    Period size: 45  Copynumber: 2.1  Consensus size: 43

      12510 CATTACCTAA

                               *                       
      12520 ATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAAAGCAAAT
          1 ATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAGCAAAT

                                                   *     
      12562 ATTCTACTCCTCCATCTCTAGATAATTCATCAAAATAAATCAAAT
          1 ATTCTA--CCTCCATCTCTAGATAATTCATCAAAATAAAGCAAAT

               
      12607 ATT
          1 ATT

      12610 AATTGTTGCT


Statistics
Matches: 43,  Mismatches: 2, Indels: 3
        0.90            0.04        0.06

Matches are distributed among these distances:
  42    6  0.14
  45   37  0.86

ACGTcount: A:0.40, C:0.22, G:0.04, T:0.33


Consensus pattern (43 bp):   
ATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAGCAAAT
Done.