genome.fa.s15448.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015448.1 Corchorus capsularis cultivar CVL-1 contig15469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70676

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10431--10463	17	1.9	17	100	0	66	27	6	36	30	1.81
10707--10742	19	1.9	18	88	5	54	41	2	22	33	1.68
15570--15668	11	9.9	10	75	22	75	43	0	20	36	1.52
15581--15668	19	4.5	19	70	27	76	44	0	20	35	1.52
15570--15668	30	3.3	30	100	0	198	43	0	20	36	1.52
15570--15690	60	2.0	60	90	3	190	45	1	18	34	1.59
26224--26292	33	2.1	33	88	0	102	40	18	21	18	1.91
29377--29561	62	3.0	62	86	6	279	43	16	22	17	1.87
29377--29557	58	3.1	58	89	3	263	42	16	23	17	1.89
30015--30050	17	2.1	17	100	0	72	22	38	16	22	1.93
30445--30667	59	3.9	58	77	11	221	34	19	24	21	1.96
30482--30686	54	3.7	54	77	10	180	33	18	24	23	1.97
33306--33362	25	2.4	24	88	5	80	56	3	12	28	1.52
36873--36927	21	2.6	21	100	0	110	14	50	21	12	1.76
38674--38723	11	5.0	10	77	18	50	34	4	20	42	1.70
41847--42140	77	3.8	78	87	4	391	22	15	27	33	1.95
42934--42977	17	2.7	18	76	16	51	29	0	22	47	1.51
44222--44283	25	2.5	26	81	5	74	56	20	8	14	1.64
47194--47237	13	3.4	13	84	9	54	47	0	11	40	1.39
47368--47442	30	2.5	31	80	4	89	33	10	18	37	1.86
47455--47494	12	3.5	11	83	10	53	12	15	0	72	1.12
50859--50936	27	2.7	29	76	9	79	29	15	12	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51095--51174	29	2.7	29	82	9	90	30	17	13	38	1.88
51920--51954	11	3.2	11	91	0	61	80	17	2	0	0.84
53414--53485	31	2.4	31	88	4	103	43	8	15	33	1.76
53650--53727	28	2.7	28	82	6	84	43	8	12	34	1.74
56301--56347	20	2.3	20	82	10	60	55	0	6	38	1.26
68239--68285	13	3.5	13	72	16	51	12	25	0	61	1.31
68236--68313	27	2.8	28	84	9	81	15	23	0	61	1.33
68346--68460	21	5.4	21	77	11	85	21	20	6	51	1.70
68358--68460	42	2.4	43	79	6	129	21	18	6	53	1.67
68443--68476	16	2.1	16	100	0	68	17	17	5	58	1.57
68526--68560	14	2.4	14	90	4	52	22	11	5	60	1.52
68585--68832	22	11.8	22	71	14	105	21	19	5	54	1.64
68604--68700	21	4.5	21	84	2	113	21	20	7	50	1.72
68679--68758	29	2.5	33	82	13	105	22	16	5	56	1.59
68704--68768	14	4.5	14	75	19	53	21	15	4	58	1.55
68698--68768	29	2.5	28	74	17	74	22	15	4	57	1.55
68756--68935	72	2.5	72	77	13	183	19	22	3	55	1.58
68732--68934	37	5.6	37	78	14	183	19	21	3	55	1.58
68819--68976	86	1.8	86	86	5	230	18	22	2	55	1.55
69122--69375	55	4.6	55	93	1	409	23	20	11	45	1.82
69122--69375	111	2.3	110	91	0	409	23	20	11	45	1.82

Tables:   1

The End!