Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015450.1 Corchorus capsularis cultivar CVL-1 contig15471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58005

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--84
27
2.9
27
94
0
129
41
24
19
15
1.90
5846--5892
24
1.9
25
86
4
69
6
29
8
55
1.55
9763--9963
50
4.0
50
96
0
375
19
21
23
34
1.97
10009--10063
26
2.0
28
89
6
87
18
14
27
40
1.89
13730--13769
21
2.0
21
85
5
55
22
17
17
42
1.89
31988--32158
22
7.9
22
74
10
122
34
14
8
42
1.77
32031--32145
44
2.6
44
79
6
137
36
13
9
40
1.78
35282--35341
30
2.0
30
100
0
120
43
6
16
33
1.74
42405--42479
26
2.8
26
87
4
105
22
21
4
52
1.64
42522--42595
27
2.7
28
84
12
100
16
22
2
58
1.51
42522--42595
29
2.7
27
82
13
98
16
22
2
58
1.51
42642--42718
24
3.5
21
71
11
64
24
11
3
59
1.49
42739--42969
127
1.8
126
90
2
374
21
23
4
50
1.66
42888--42936
20
2.5
20
87
12
66
20
18
8
53
1.70
42781--42972
22
9.1
22
76
9
125
21
23
4
50
1.67
46359--46404
17
2.7
17
80
12
58
50
0
17
32
1.47
46588--46612
12
2.1
12
100
0
50
40
8
28
24
1.83
47171--47239
35
2.0
35
85
0
93
31
24
17
26
1.97
47648--47705
28
2.1
28
100
0
116
39
10
12
37
1.77
50577--50626
22
2.3
22
92
0
82
18
40
16
26
1.90
52697--52821
63
2.0
64
87
1
180
26
23
14
36
1.93
52787--52927
62
2.3
62
87
0
192
27
24
12
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52787--52943
62
2.5
61
82
4
179
28
23
14
33
1.94
56959--56996
14
2.7
14
88
8
51
42
7
15
34
1.76

Tables:   1

The End!