Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015453.1 Corchorus capsularis cultivar CVL-1 contig15474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7289
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31


Found at i:624 original size:8 final size:8

Alignment explanation


    Indices: 611--644  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        601 ACCTTCTTAA

                    
        611 AAAAATTC
          1 AAAAATTC

                    
        619 AAAAATTC
          1 AAAAATTC

                 *   
        627 AGAAACTTC
          1 A-AAAATTC

                    
        636 AAAAATTC
          1 AAAAATTC

             
        644 A
          1 A

        645 TAGCCGATTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24


Consensus pattern (8 bp):   
AAAAATTC
Done.