Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015463.1 Corchorus capsularis cultivar CVL-1 contig15484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26018

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6698--6745
20
2.4
20
78
0
60
10
14
2
72
1.19
6708--6768
21
3.0
21
83
7
63
8
8
3
80
1.01
6780--6820
11
3.2
13
83
16
59
17
0
14
68
1.22
7704--7770
35
1.9
35
81
0
80
10
5
26
56
1.56
7732--7888
23
6.8
23
88
1
208
10
8
30
50
1.65
7732--7912
69
2.6
69
85
5
188
11
8
28
51
1.67
7906--7956
11
4.5
11
76
13
50
11
7
15
64
1.48
7903--7991
34
2.6
34
85
3
108
13
7
19
59
1.58
8815--8857
17
2.4
18
80
7
52
23
11
13
51
1.74
9106--9135
2
15.0
2
92
0
51
53
0
0
46
1.00
11888--12053
46
3.5
46
77
8
172
20
27
15
36
1.92
12114--12342
62
3.7
62
83
9
261
27
23
13
34
1.93
18329--18376
24
2.0
24
100
0
96
4
45
37
12
1.61
19869--19908
10
3.7
12
75
25
52
22
5
5
67
1.30
19877--19916
20
2.0
20
90
0
62
17
5
10
67
1.37
20156--20188
11
3.0
11
95
0
57
42
27
27
3
1.70
21475--21501
6
4.5
6
100
0
54
29
0
14
55
1.40
21819--21866
20
2.4
20
82
6
53
47
2
10
39
1.49
21774--21999
51
4.5
50
83
5
242
42
2
14
41
1.59
22509--23166
35
18.7
35
84
7
807
39
11
17
31
1.85

Tables:   1

The End!