genome.fa.s15464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015464.1 Corchorus capsularis cultivar CVL-1 contig15485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113343

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7133--7168	10	3.8	9	89	10	54	16	0	0	83	0.65
8174--8286	33	3.4	33	84	6	149	8	26	41	23	1.83
9664--9795	23	6.0	22	75	14	94	61	9	21	7	1.52
9687--9719	17	1.9	17	93	0	57	69	9	15	6	1.34
9664--9797	74	1.9	70	82	6	169	61	9	21	7	1.52
9664--9797	11	12.1	11	77	13	116	61	9	21	7	1.52
9785--10061	36	7.8	36	82	7	318	43	9	22	24	1.82
9785--10061	71	3.9	71	86	5	364	43	9	22	24	1.82
9785--10037	107	2.4	106	86	5	355	44	8	21	25	1.81
9785--10092	143	2.2	141	81	5	361	44	9	21	25	1.81
10065--10177	32	3.4	31	72	13	100	46	6	17	30	1.73
10075--10193	36	3.4	34	78	17	129	46	7	16	29	1.75
10065--10193	68	1.9	68	85	6	181	47	6	16	29	1.72
12311--12339	2	14.5	2	100	0	58	48	0	0	51	1.00
13958--13983	2	13.0	2	100	0	52	50	0	0	50	1.00
19340--19461	53	2.3	53	88	2	183	37	16	15	30	1.90
23110--23177	20	3.3	21	82	12	70	47	4	20	27	1.69
23125--23177	22	2.5	20	87	6	70	45	3	22	28	1.70
23210--23270	22	2.7	22	82	7	61	39	3	16	40	1.65
23216--23270	23	2.5	22	87	3	74	41	3	14	40	1.63
23291--23445	22	7.2	22	73	11	92	45	5	21	27	1.74
23239--23385	58	2.5	57	79	3	170	42	6	20	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23325--23376	14	3.5	15	82	10	63	44	3	19	32	1.69
23397--23476	36	2.2	36	88	0	115	40	5	25	30	1.77
23610--24373	22	35.7	20	69	20	195	43	5	21	29	1.75
23697--24348	14	43.5	15	66	22	170	44	5	21	29	1.74
23692--24324	44	15.1	43	68	22	236	44	5	21	29	1.74
23674--24346	102	6.6	102	77	14	481	43	5	21	29	1.74
23756--23831	38	2.0	38	82	10	93	40	3	22	32	1.72
24038--24306	58	4.7	58	77	15	201	45	5	20	29	1.72
23898--24412	8	68.2	8	68	21	164	45	5	21	28	1.73
24432--24462	16	1.9	16	93	0	53	41	3	29	25	1.71
30810--30925	52	2.2	53	90	1	180	36	16	15	31	1.90
35349--35380	6	5.3	6	100	0	64	31	0	15	53	1.43
35796--35831	17	2.0	19	89	10	58	61	11	5	22	1.50
49715--49766	21	2.5	21	83	0	68	57	1	34	5	1.33
49756--49798	18	2.4	18	88	0	59	51	9	27	11	1.69
69352--69383	7	4.6	7	96	0	55	75	9	0	15	1.05
69426--69462	18	2.1	18	90	5	58	72	2	2	21	1.09
70026--70061	19	1.9	19	88	5	56	55	0	2	41	1.14
71951--72040	42	2.1	43	91	2	146	52	18	13	15	1.75
71955--72024	21	3.3	21	68	7	61	54	15	14	15	1.72
81507--81740	123	1.9	123	84	3	301	44	15	17	21	1.86
84104--84155	26	2.0	26	100	0	104	53	15	11	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88079--88107	13	2.1	14	93	6	51	75	6	10	6	1.17
92741--92765	6	4.2	6	100	0	50	84	0	16	0	0.63
105020--105068	3	16.3	3	100	0	98	32	0	0	67	0.91
108402--108485	25	3.5	25	71	15	95	15	27	22	34	1.94
109659--109696	18	2.1	19	90	5	60	23	10	18	47	1.79

Tables:   1

The End!