Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015469.1 Corchorus capsularis cultivar CVL-1 contig15490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40958

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2448--2539
45
2.1
44
95
2
166
36
13
27
22
1.91
7038--7100
30
2.0
32
90
6
103
39
7
12
39
1.73
9441--9482
2
20.5
2
90
4
66
47
4
0
47
1.23
9517--9575
30
1.9
31
93
3
102
28
15
3
52
1.58
9517--9582
30
2.1
31
88
5
98
30
13
4
51
1.61
9627--9660
15
2.2
16
89
5
52
41
2
5
50
1.42
9787--10041
22
11.6
22
75
9
157
41
9
14
34
1.78
9804--10040
44
5.4
44
73
11
175
41
9
13
35
1.77
10122--10174
20
2.7
20
93
0
97
41
11
16
30
1.84
10122--10352
22
10.6
21
71
11
101
41
9
16
33
1.79
10248--10311
23
2.7
23
78
2
65
43
6
14
35
1.70
10317--10363
22
2.1
22
92
0
76
34
10
14
40
1.81
10317--10372
22
2.5
23
83
13
73
35
12
12
39
1.81
10372--10466
44
2.1
45
80
5
104
31
12
15
40
1.85
10401--10466
22
3.0
22
80
4
69
31
12
16
39
1.85
10490--10539
23
2.3
23
86
6
68
56
4
14
26
1.56
11178--11358
93
1.9
93
88
0
272
40
11
22
25
1.88
11540--11579
20
2.0
20
85
4
55
15
7
20
57
1.61
12008--12042
14
2.7
13
91
8
54
14
20
8
57
1.63
12864--13044
88
2.1
88
97
0
344
24
26
14
33
1.95
15320--15354
14
2.7
13
91
8
54
14
20
8
57
1.63
20856--21311
22
21.2
22
72
15
163
38
15
8
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20865--21058
43
4.4
44
73
7
144
40
13
7
38
1.73
21008--21372
22
17.0
22
71
15
172
38
16
9
35
1.82
21081--21307
125
1.8
125
81
5
289
36
16
9
37
1.81
21206--21540
44
7.8
44
71
14
193
37
15
10
36
1.82
21379--21458
21
3.8
21
73
8
72
41
7
12
38
1.71
21443--21545
22
4.8
22
75
10
88
39
10
11
37
1.77
21491--21546
20
2.6
22
80
5
62
39
16
8
35
1.80
23531--23572
3
13.7
3
95
5
75
64
0
0
35
0.94
23531--23575
19
2.4
19
96
3
83
64
0
0
35
0.94
25091--25120
2
15.0
2
100
0
60
50
0
0
50
1.00
26780--26807
2
14.0
2
100
0
56
50
0
0
50
1.00
26905--26947
18
2.3
18
84
4
50
32
2
2
62
1.20
29254--29311
3
19.0
3
96
3
107
65
0
0
34
0.93
37616--37648
2
16.5
2
100
0
66
48
0
0
51
1.00
38374--38608
118
2.0
118
96
0
434
44
11
17
25
1.83

Tables:   1

The End!