genome.fa.s15470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015470.1 Corchorus capsularis cultivar CVL-1 contig15491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200050

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4059--4107	24	2.0	24	96	0	89	51	2	16	30	1.56
4345--4396	24	2.2	23	82	6	59	40	1	3	53	1.30
16320--16416	32	3.0	31	73	14	97	18	40	27	13	1.88
17414--17460	22	2.1	22	88	0	67	51	29	8	10	1.66
17639--17750	32	3.5	32	79	2	127	38	34	9	16	1.82
17649--17739	16	5.7	15	68	10	56	39	32	8	18	1.82
24376--24402	13	2.1	13	100	0	54	55	7	0	37	1.28
25099--25142	23	1.9	23	85	0	61	56	15	4	22	1.57
36517--36574	27	2.1	27	90	0	89	32	25	22	18	1.97
36535--36809	130	2.1	130	83	2	345	30	23	20	25	1.98
36718--37266	252	2.2	250	91	1	886	32	20	17	28	1.96
36793--37061	140	1.9	139	88	3	407	32	21	18	27	1.97
36964--37173	112	1.9	113	88	1	323	32	19	18	29	1.96
43858--43914	21	2.7	22	84	15	84	24	14	0	61	1.33
44335--44360	13	2.0	13	100	0	52	53	7	15	23	1.67
45036--45204	89	1.9	89	96	0	311	28	17	19	33	1.95
45523--45870	180	2.0	176	81	5	414	34	12	15	37	1.85
47253--47412	31	5.1	31	81	3	169	33	24	23	18	1.96
47295--47350	19	3.3	19	63	31	54	33	25	23	17	1.96
47253--47412	62	2.6	63	84	3	207	33	24	23	18	1.96
47253--47432	31	5.8	30	79	10	166	34	25	22	17	1.96
47253--47432	63	2.9	62	77	12	197	34	25	22	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51568--51604	15	2.5	15	90	0	56	21	18	16	43	1.88
51598--51627	15	1.9	16	93	6	53	13	23	16	46	1.82
52822--52861	17	2.4	17	86	0	53	70	2	0	27	1.01
52842--52870	14	2.0	15	93	6	51	68	0	0	31	0.89
55564--55615	25	2.0	26	85	3	70	46	23	21	9	1.80
55808--55878	27	2.6	27	84	0	88	46	29	11	12	1.77
56545--56592	22	2.2	23	78	17	57	52	0	4	43	1.20
56605--56657	20	2.7	19	82	8	70	43	0	5	50	1.25
61209--61249	21	2.0	21	90	4	66	24	0	31	43	1.54
73826--73850	2	12.5	2	100	0	50	52	0	0	48	1.00
73879--73944	31	2.1	31	91	5	107	28	16	4	50	1.65
74089--74162	38	2.0	38	83	2	96	10	18	13	56	1.66
74220--74340	22	5.5	22	76	5	111	42	10	14	31	1.80
74491--74609	22	5.4	22	70	16	95	43	9	15	31	1.78
74491--74609	44	2.7	44	81	5	125	43	9	15	31	1.78
74614--74715	23	4.4	23	87	4	134	40	5	16	37	1.73
74729--74788	22	2.7	22	78	14	70	33	13	13	40	1.83
74783--74952	22	7.7	22	71	10	89	34	11	16	37	1.84
74814--74902	45	2.0	45	84	4	117	32	10	16	40	1.82
74923--74973	22	2.3	22	83	6	68	54	3	13	27	1.56
75001--75129	62	2.1	62	92	0	213	44	10	12	32	1.75
76289--76326	11	3.5	11	89	10	51	39	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76946--77013	26	2.6	26	90	0	109	54	10	1	33	1.43
76946--77063	52	2.4	51	79	13	122	54	10	1	33	1.44
82265--82314	26	1.9	26	87	0	73	36	4	22	38	1.73
86561--86608	24	2.0	24	95	0	87	45	22	4	27	1.70
87062--87117	28	2.0	28	100	0	112	39	32	10	17	1.84
89310--89341	13	2.4	14	85	15	50	31	6	0	62	1.20
91634--91674	21	2.0	21	85	9	57	46	2	9	41	1.50
93606--93714	51	2.1	52	94	3	193	37	11	18	33	1.86
99107--99195	45	2.0	45	100	0	178	37	22	15	24	1.93
123436--123461	3	8.7	3	100	0	52	30	0	0	69	0.89
130121--130162	18	2.3	19	83	4	50	21	9	0	69	1.17
133542--134029	169	2.9	164	79	6	532	30	14	17	37	1.89
134965--135021	26	2.1	27	81	9	64	31	19	7	42	1.78
140566--140597	17	1.9	16	93	6	55	12	9	18	59	1.59
141842--141898	29	2.0	29	96	0	105	31	15	12	40	1.85
148944--148990	21	2.3	20	88	3	67	10	0	0	89	0.49
148944--148988	18	2.5	18	89	7	65	11	0	0	88	0.50
157913--157969	28	2.0	28	90	6	89	38	14	5	42	1.68
165891--165925	18	1.9	18	88	0	52	51	2	0	45	1.16
171131--171178	17	2.8	17	90	0	69	20	22	22	33	1.97
174511--174558	25	1.9	25	100	0	96	50	14	14	20	1.78
177010--177069	29	2.1	29	90	0	93	31	3	20	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179849--179879	1	31.0	1	93	0	53	0	0	3	96	0.21
180410--180495	45	1.9	45	88	2	129	26	19	22	31	1.98
182113--182138	13	2.0	13	100	0	52	30	0	0	69	0.89
188443--188496	25	2.2	25	93	0	90	31	22	11	35	1.89
195765--196147	203	1.9	203	87	3	565	36	18	16	28	1.92
196347--196402	26	2.2	26	100	0	112	37	0	7	55	1.27

Tables:   1

The End!