Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015474.1 Corchorus capsularis cultivar CVL-1 contig15495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61583

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11113--11299
98
1.9
96
92
2
311
42
12
11
33
1.79
11308--11349
22
1.9
22
90
0
66
42
9
7
40
1.65
13915--13975
32
1.9
32
93
0
104
32
14
14
37
1.87
16648--16870
109
2.0
109
93
0
383
27
20
20
30
1.98
17907--17963
27
2.1
27
83
0
69
7
17
33
42
1.76
19990--20033
22
2.0
22
86
4
61
36
20
13
29
1.91
19991--20204
73
2.9
73
95
0
374
31
20
18
29
1.96
20440--20499
31
2.0
30
87
6
86
28
20
11
40
1.87
20580--20614
17
2.1
17
94
0
61
20
0
0
80
0.72
20577--20613
9
4.2
9
89
6
58
24
0
0
75
0.80
20569--20613
9
4.8
10
84
13
51
26
0
0
73
0.84
29579--29612
16
2.1
16
100
0
68
47
5
23
23
1.73
29909--29941
2
16.5
2
87
12
50
51
0
3
45
1.16
32982--33095
56
2.0
56
100
0
228
33
5
14
47
1.66
33398--33426
3
9.7
3
100
0
58
65
0
0
34
0.93
37466--37841
132
2.8
130
81
7
395
29
17
17
35
1.93
39754--39804
23
2.2
23
96
0
93
45
19
11
23
1.83
39761--39799
19
2.0
20
85
5
53
43
20
12
23
1.86
49272--49324
26
2.0
26
96
0
97
26
11
18
43
1.84
54584--54609
1
26.0
1
100
0
52
100
0
0
0
0.00
55458--55539
23
3.3
23
67
26
69
34
8
14
42
1.76
55474--55556
28
3.1
28
65
28
81
32
7
20
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55459--55563
51
2.1
51
100
0
210
33
8
17
40
1.80
55800--55839
20
2.0
20
90
0
62
32
5
40
22
1.76
57300--57608
102
3.0
102
84
5
376
33
11
18
36
1.88
58336--58364
1
29.0
1
100
0
58
0
0
0
100
0.00
61174--61236
32
2.0
32
96
0
117
53
22
4
19
1.63

Tables:   1

The End!