Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015477.1 Corchorus capsularis cultivar CVL-1 contig15498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40630

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1909--1951
18
2.4
18
80
0
50
34
13
20
30
1.92
5210--5298
30
2.9
31
88
5
135
17
21
22
38
1.94
9009--9068
27
2.2
27
93
0
111
35
20
16
28
1.94
13769--13849
16
5.2
16
79
7
78
35
13
1
49
1.50
14004--14041
11
3.5
11
85
10
51
57
2
0
39
1.12
16744--16823
22
3.6
22
86
3
108
45
13
6
35
1.69
17064--17124
23
2.7
23
77
7
63
31
18
4
45
1.70
17248--17371
22
5.6
22
74
4
97
36
16
8
38
1.80
17429--17573
22
6.9
22
71
15
83
37
15
9
37
1.81
22874--22913
12
3.2
12
82
3
53
37
0
0
62
0.95
25996--26564
22
25.8
22
68
11
130
37
14
9
38
1.78
26334--26541
45
4.8
43
76
12
140
35
14
9
40
1.79
26351--26541
87
2.2
88
79
11
205
33
14
9
41
1.79
26218--26542
44
7.4
45
72
14
160
36
14
10
39
1.80
26284--26601
109
2.9
108
77
9
309
38
14
9
37
1.79
26548--26608
22
2.6
24
92
5
99
50
13
9
26
1.72
26800--26878
29
2.6
30
88
4
124
16
27
16
39
1.90
27078--27155
29
2.7
29
85
2
102
37
19
28
15
1.92
27515--27606
41
2.2
42
83
11
109
39
15
8
36
1.78
38605--38641
17
2.1
18
95
5
67
27
35
10
27
1.90
39694--39735
3
13.7
3
85
5
57
66
4
0
28
1.12
39699--39764
6
11.0
6
90
0
51
66
18
0
15
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39701--39738
9
4.2
9
93
0
67
68
7
0
23
1.16
39690--39741
12
4.3
12
82
4
52
67
9
0
23
1.20
39690--39735
18
2.6
18
93
6
76
67
6
0
26
1.15
39734--39764
3
10.3
3
100
0
62
67
32
0
0
0.91
40598--40626
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!