Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015478.1 Corchorus capsularis cultivar CVL-1 contig15499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9310
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:819 original size:12 final size:12

Alignment explanation


    Indices: 770--820  Score: 50
    Period size: 12  Copynumber: 4.2  Consensus size: 12

        760 AAGATGGACG

                  *     
        770 ATCTTCTTCATC
          1 ATCTTCCTCATC

               *         
        782 ATCATCCTCAATC
          1 ATCTTCCTC-ATC

                  *  *  
        795 -TCTTCATCGTC
          1 ATCTTCCTCATC

                        
        806 ATCTTCCTCATC
          1 ATCTTCCTCATC

               
        818 ATC
          1 ATC

        821 CCCCTCATCG


Statistics
Matches: 30,  Mismatches: 7, Indels: 4
        0.73            0.17        0.10

Matches are distributed among these distances:
  11    2  0.07
  12   25  0.83
  13    3  0.10

ACGTcount: A:0.20, C:0.37, G:0.02, T:0.41


Consensus pattern (12 bp):   
ATCTTCCTCATC
Done.