Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001548.1 Corchorus capsularis cultivar CVL-1 contig01548, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:403 original size:12 final size:13

Alignment explanation


    Indices: 383--411  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

        373 GGACCCAATA

                         
        383 AATTCTTAATTGG
          1 AATTCTTAATTGG

                         
        396 AATT-TTAATTGG
          1 AATTCTTAATTGG

                
        408 AATT
          1 AATT

        412 AAAGGATCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48


Consensus pattern (13 bp):   
AATTCTTAATTGG
Done.