Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015480.1 Corchorus capsularis cultivar CVL-1 contig15501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63140

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3633--4442
44
18.9
43
69
14
362
36
15
9
38
1.80
3633--4219
22
26.9
22
71
12
252
36
15
9
38
1.79
3945--4024
23
3.5
23
81
8
92
38
11
7
42
1.69
4274--4522
22
11.4
22
71
9
143
34
14
10
41
1.79
4476--4572
50
2.0
46
82
7
113
34
15
11
39
1.83
4635--4711
29
2.6
30
78
10
86
33
24
12
28
1.93
5020--5097
38
2.1
35
88
6
111
60
12
14
12
1.60
5212--5272
31
2.0
31
87
6
88
49
3
13
34
1.58
5212--5279
31
2.2
30
84
7
82
50
4
14
30
1.63
7073--7337
45
5.9
45
82
6
304
31
16
37
13
1.89
8917--9123
87
2.4
87
79
6
231
37
24
7
30
1.83
11883--11939
32
1.9
27
100
0
69
40
17
10
31
1.84
13118--13161
11
4.0
11
87
0
61
50
6
2
40
1.42
13114--13160
22
2.1
22
92
0
76
48
6
2
42
1.40
15257--15332
32
2.4
32
81
0
89
55
23
11
9
1.65
15580--15621
21
2.0
22
85
4
59
38
38
9
14
1.78
15596--15681
32
2.7
31
84
13
104
34
40
9
15
1.79
33520--33669
45
3.3
45
85
2
194
29
10
17
42
1.83
34067--34107
20
2.1
20
90
4
66
39
14
4
41
1.67
34228--34252
2
12.5
2
100
0
50
52
0
0
48
1.00
34414--34554
17
8.5
17
82
3
128
34
34
10
21
1.88
34446--34554
16
6.7
16
85
5
103
33
33
11
22
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34429--34558
32
4.0
33
81
4
140
32
32
13
21
1.93
35344--35375
2
16.0
2
100
0
64
50
0
0
50
1.00
36930--36962
3
11.0
3
100
0
66
66
0
0
33
0.92
41333--41428
46
2.1
46
96
0
174
41
6
6
45
1.54
42136--42276
31
4.6
32
82
2
121
19
21
24
34
1.96
42141--42276
62
2.2
62
81
2
166
19
21
24
35
1.96

Tables:   1

The End!