Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015485.1 Corchorus capsularis cultivar CVL-1 contig15506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31947

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--613
22
24.5
22
67
11
134
36
13
9
39
1.78
199--284
45
1.9
45
83
4
111
38
15
11
34
1.83
334--437
46
2.3
45
81
6
122
40
14
7
37
1.75
608--674
19
3.5
19
81
2
80
23
20
10
44
1.82
780--1026
22
11.3
22
71
10
159
34
13
10
42
1.78
755--921
88
1.9
88
82
4
212
33
12
10
43
1.77
1033--1088
22
2.5
23
82
8
71
35
17
5
41
1.73
1117--1172
24
2.5
22
77
11
58
32
17
12
37
1.88
1048--1171
22
5.5
22
71
10
72
33
19
11
35
1.87
1210--1274
22
2.9
22
83
4
76
41
23
6
29
1.78
1244--1350
22
4.8
22
74
11
76
36
17
10
35
1.84
1620--1692
30
2.4
31
79
11
87
49
2
15
32
1.58
2896--2924
1
29.0
1
100
0
58
100
0
0
0
0.00
10184--10209
10
2.6
10
100
0
52
30
7
23
38
1.83
10320--10358
12
3.6
12
74
25
50
30
15
28
25
1.96
11402--11433
15
2.2
15
94
5
57
40
0
3
56
1.15
13364--13389
2
13.0
2
100
0
52
50
0
0
50
1.00
14376--14413
20
1.9
20
89
10
60
23
10
44
21
1.83
15371--15425
6
9.5
6
77
15
53
80
16
3
0
0.86
15375--15418
16
2.8
16
85
0
61
81
13
4
0
0.83
15797--15975
92
1.9
93
94
1
315
37
13
10
37
1.79
21147--21337
95
2.0
95
88
0
283
28
21
18
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22110--22235
63
2.0
63
95
0
225
21
19
12
46
1.82
22242--22275
1
34.0
1
100
0
68
100
0
0
0
0.00
22498--22576
38
2.1
38
97
0
149
26
21
7
44
1.79
22849--22904
27
2.0
29
86
6
80
48
14
8
28
1.74
22849--22909
25
2.2
29
86
11
85
47
16
8
27
1.75
22845--22918
29
2.5
30
74
14
82
44
17
6
31
1.75
26258--26940
341
2.0
341
100
0
1366
40
19
13
25
1.89
28994--29032
19
2.0
20
85
5
53
7
15
23
53
1.67
31773--31811
17
2.3
17
86
8
53
28
15
20
35
1.93

Tables:   1

The End!