Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015490.1 Corchorus capsularis cultivar CVL-1 contig15511, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18531
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:14466 original size:168 final size:163

Alignment explanation


    Indices: 14050--14542  Score: 689
    Period size: 165  Copynumber: 3.0  Consensus size: 163

      14040 AACTTTTGCC

                  *     *             *   *                         * **     
      14050 GCACCTCATCATCAGCACCTTCCATCCCCTTAAAAATGTGCTCCAACATATTGCAGTCAAATATT
          1 GCACCTGATCATTAGCACCTTCCATCTCCTCAAAAATGTGCTCCAACATATTGCAGGCGGATATT

             *                     *        *                                
      14115 TGGACACTTTTCAATTGCACAATTTTTTTAGTGACTGACGCTGGAAAGAGAGTTTTCAGGCTACC
         66 TTGACACTTTTCAATTGCACAA-ATTTTTAGTAACTGACGCTGGAAAGAGAGTTTTCAGGCTACC

                 *                             
      14180 ACATGCCATTATCTCCAAAGTTTCCAACTTGGATA
        130 ACAT-TCATTATCTCCAAAGTTTCCAACTTGGATA

                                                                        *    
      14215 GCACCTGATCATTAGCACCTTCCATCTCCTCAAAAATGTGCTCCAACATATTGCAGGCGGCTATT
          1 GCACCTGATCATTAGCACCTTCCATCTCCTCAAAAATGTGCTCCAACATATTGCAGGCGGATATT

                                               *   *              *          
      14280 TTGACACTTTTCAATTGCACAAATTTCTTAGTAACCGACCCTGGAAAGAGAGTTCTCAGGCTACC
         66 TTGACACTTTTCAATTGCACAAATTT-TTAGTAACTGACGCTGGAAAGAGAGTTTTCAGGCTACC

                  *                         *  
      14345 ACATTCGTCTATCTCCAAAGTTTCCAACTTGGGTA
        130 ACATTCAT-TATCTCCAAAGTTTCCAACTTGGATA

                                                                           * 
      14380 GCACCTGATATTCATTAGCACCTTCCATCTCCTCAAAAATGTGCTCCAACATATTGCAGGCGGTT
          1 GCACCTG--A-TCATTAGCACCTTCCATCTCCTCAAAAATGTGCTCCAACATATTGCAGGCGGAT

                                            *              *              *  
      14445 ATTTTGACACTTTTCAATTGCACAAAATTTTTTGTAACTGACGCTGGGAAGAGAGTTTTCAGACT
         63 ATTTTGACACTTTTCAATTGCAC-AAATTTTTAGTAACTGACGCTGGAAAGAGAGTTTTCAGGCT

                     * *   *                 
      14510 ACCACATTTAAATATATCCAAAGTTTCCAACTT
        127 ACCACA-TTCATTATCTCCAAAGTTTCCAACTT

      14543 TTTCAGGAAA


Statistics
Matches: 293,  Mismatches: 28, Indels: 11
        0.88            0.08        0.03

Matches are distributed among these distances:
 164    5  0.02
 165  148  0.51
 167    1  0.00
 168  131  0.45
 169    8  0.03

ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31


Consensus pattern (163 bp):   
GCACCTGATCATTAGCACCTTCCATCTCCTCAAAAATGTGCTCCAACATATTGCAGGCGGATATT
TTGACACTTTTCAATTGCACAAATTTTTAGTAACTGACGCTGGAAAGAGAGTTTTCAGGCTACCA
CATTCATTATCTCCAAAGTTTCCAACTTGGATA
Done.