genome.fa.s15494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015494.1 Corchorus capsularis cultivar CVL-1 contig15515, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119779

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437--711	109	2.5	109	91	4	419	38	11	1	48	1.50
1825--1913	16	5.7	15	78	5	88	10	13	37	39	1.78
2676--2718	16	2.7	16	92	0	68	9	13	39	37	1.78
8189--8266	31	2.5	31	89	2	113	34	20	8	35	1.84
8189--8286	31	3.2	30	85	4	81	36	18	10	34	1.85
8619--8656	11	3.5	11	89	10	51	39	0	2	57	1.12
12474--12526	24	2.2	24	86	3	81	28	11	28	32	1.91
15298--15343	22	2.0	23	87	8	67	28	13	26	32	1.93
15523--15636	62	1.9	58	85	10	158	42	25	5	27	1.76
22986--23171	93	2.0	92	88	1	273	25	20	13	39	1.90
28070--28152	26	3.4	26	63	19	70	24	8	20	46	1.78
28516--28551	15	2.4	15	90	0	54	11	63	8	16	1.49
32028--32728	41	17.2	41	84	5	900	14	27	18	39	1.90
35159--35202	20	2.1	20	83	8	52	13	25	15	45	1.83
36469--36514	2	23.5	2	91	4	76	47	0	2	50	1.13
37146--37172	8	3.4	8	100	0	54	14	11	11	62	1.53
39527--39559	11	3.1	11	91	4	50	54	18	9	18	1.69
40966--41060	33	2.9	33	87	0	145	36	20	11	31	1.88
48325--48407	26	3.0	26	77	10	85	19	15	3	61	1.48
48384--48430	21	2.2	21	88	0	67	23	21	4	51	1.65
48325--48410	31	2.9	30	67	20	74	19	16	3	60	1.50
48392--48708	36	8.8	36	82	5	383	19	21	4	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48471--48663	7	26.9	7	70	14	108	18	21	4	55	1.60
48413--48663	7	34.7	7	70	6	97	18	21	4	55	1.59
50786--50822	19	2.0	18	89	5	56	32	21	5	40	1.76
63115--63177	31	2.0	31	96	0	99	49	12	17	20	1.79
63568--63596	3	10.0	3	92	7	51	0	31	0	68	0.89
63667--63949	48	6.0	47	85	5	277	37	20	21	20	1.94
64105--64267	87	1.9	87	83	6	213	20	20	26	31	1.98
64195--64280	44	1.9	45	83	6	113	16	22	32	29	1.95
65171--65199	10	2.9	10	100	0	58	20	48	0	31	1.50
65956--66135	87	2.1	87	94	0	315	30	16	10	42	1.82
67295--67349	3	18.7	3	88	3	85	30	1	0	67	1.01
70465--70547	28	3.0	27	78	13	96	18	20	2	59	1.49
70456--70541	29	3.0	28	80	8	84	17	22	2	58	1.50
70524--70571	21	2.3	21	81	0	60	22	25	4	47	1.69
70553--70815	7	36.3	7	66	13	59	19	21	3	56	1.55
70553--70861	22	14.9	20	66	19	86	19	21	3	55	1.56
70532--70732	73	2.8	72	90	2	314	19	22	2	55	1.57
70559--70811	14	17.4	14	65	22	87	18	22	3	56	1.56
70721--70871	36	4.2	36	86	1	214	19	20	3	55	1.59
70662--70790	58	2.2	59	95	1	233	19	23	2	55	1.55
70854--70958	21	5.0	22	82	11	98	22	20	5	51	1.68
70779--70909	56	2.3	56	82	10	167	21	18	4	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70847--70971	42	2.9	42	79	12	121	24	19	5	51	1.68
76722--76760	20	2.0	20	100	0	78	41	12	35	10	1.77
78302--78614	35	8.9	35	85	6	368	37	9	19	32	1.85
78301--78614	106	3.0	106	87	6	417	37	9	19	33	1.85
78478--78538	20	3.2	20	64	17	58	36	11	19	32	1.88
78302--78614	142	2.2	141	94	0	554	37	9	19	32	1.85
87385--87411	14	1.9	14	100	0	54	22	14	18	44	1.86
88022--88049	12	2.3	12	100	0	56	0	7	7	85	0.73
91148--91188	21	2.0	21	90	0	64	26	21	12	39	1.89
92902--92993	29	3.1	28	76	16	87	18	14	29	38	1.90
94673--94702	2	15.5	2	93	6	53	53	0	0	46	1.00
104821--104870	9	5.7	9	77	13	59	24	58	14	4	1.53
104809--104872	26	2.4	27	87	7	105	25	54	14	6	1.62
104916--105026	16	6.9	16	81	8	136	33	37	19	9	1.83
104896--105026	48	2.7	47	83	9	158	32	38	21	8	1.83
104916--105025	32	3.4	32	92	5	170	32	38	20	9	1.84
105135--105181	21	2.2	21	88	0	67	31	8	4	55	1.49
105630--105762	16	8.4	16	83	7	157	31	37	22	8	1.84
105654--105763	9	13.7	9	70	25	86	32	38	20	8	1.83
106680--106730	25	2.0	25	100	0	102	35	7	23	33	1.84
112318--112392	16	4.8	16	80	3	89	42	40	10	6	1.66
112318--112392	31	2.4	32	86	2	98	42	40	10	6	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113414--113444	11	2.8	11	95	0	53	45	0	6	48	1.28
113727--113757	16	1.9	16	100	0	62	51	32	16	0	1.44

Tables:   1

The End!