Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015495.1 Corchorus capsularis cultivar CVL-1 contig15516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23815

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
877--912
18
2.0
18
100
0
72
22
16
27
33
1.95
1191--1219
2
14.5
2
100
0
58
51
0
0
48
1.00
5209--5275
34
2.0
34
90
0
107
38
25
7
28
1.83
5746--5783
1
38.0
1
100
0
76
100
0
0
0
0.00
6295--6334
2
21.0
2
90
10
66
50
0
0
50
1.00
6520--6598
22
3.6
22
79
6
63
32
13
8
44
1.75
6689--6923
22
10.9
22
71
16
91
35
14
8
40
1.77
6741--6825
23
3.7
23
81
7
93
37
12
5
43
1.68
6730--6825
45
2.1
46
83
7
117
36
14
7
41
1.74
10527--10578
22
2.4
22
87
3
79
38
9
7
44
1.66
10594--10654
21
2.7
22
82
12
70
36
8
11
44
1.71
10725--11071
22
16.0
22
68
17
138
37
18
8
34
1.82
10920--11068
44
3.3
45
83
9
164
36
16
11
36
1.84
12818--12913
29
3.2
29
77
12
97
17
12
30
39
1.87
13096--13193
38
2.6
37
79
3
115
58
7
17
17
1.60
15008--15071
31
2.1
29
85
5
83
48
4
20
26
1.69
15310--15341
6
5.3
6
96
0
55
46
0
0
53
1.00
15131--15675
262
2.0
270
90
5
863
36
13
5
44
1.67
15572--15599
6
4.7
6
100
0
56
50
0
0
50
1.00
18921--18958
2
19.0
2
88
0
58
47
0
5
47
1.24

Tables:   1

The End!