Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015497.1 Corchorus capsularis cultivar CVL-1 contig15518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91466

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
552--577
2
13.0
2
100
0
52
50
0
0
50
1.00
2877--2966
19
4.7
19
80
10
103
14
8
27
48
1.73
2866--2964
38
2.6
38
82
3
92
17
8
26
48
1.74
2889--2966
38
2.0
39
90
7
124
11
8
30
48
1.70
10368--10403
17
2.1
17
94
0
63
25
11
22
41
1.86
13981--14033
26
2.0
27
96
3
99
22
35
3
37
1.72
23195--23252
23
2.5
23
94
0
98
44
22
15
17
1.86
23208--23258
23
2.2
23
89
3
75
47
23
11
17
1.81
26641--26698
10
5.4
11
82
12
57
0
6
8
84
0.78
26656--26697
12
3.8
12
90
9
63
0
0
11
88
0.53
31949--31973
13
1.9
13
100
0
50
16
28
8
48
1.74
33634--34443
409
2.0
410
96
0
1496
42
15
13
27
1.85
38227--38309
21
3.8
22
84
10
116
48
0
12
39
1.40
38209--38309
14
7.1
14
68
18
66
47
0
11
39
1.47
38209--38336
45
3.1
42
75
23
128
47
1
11
39
1.50
38288--38334
25
1.9
24
86
4
67
51
2
12
34
1.52
46627--46657
16
1.9
16
100
0
62
32
45
6
16
1.72
47713--47748
3
12.0
3
100
0
72
66
0
33
0
0.92
54115--54147
16
2.1
16
88
11
50
30
39
27
3
1.72
58690--58716
2
13.5
2
100
0
54
51
48
0
0
1.00
58716--58743
2
14.0
2
100
0
56
50
0
0
50
1.00
59492--59527
7
5.1
7
100
0
72
30
0
27
41
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65643--65776
67
2.0
67
97
0
250
41
26
0
32
1.56
65959--65983
6
4.2
6
100
0
50
32
0
16
52
1.44
66123--67093
439
2.2
438
81
6
1149
43
13
13
30
1.82
67137--67194
29
1.9
30
82
6
73
29
29
10
31
1.90
67748--67789
15
2.7
15
89
10
59
57
28
9
4
1.51
67726--67802
16
4.9
16
79
3
84
51
35
10
2
1.50
68003--68108
32
3.3
32
86
0
122
39
35
9
15
1.79
68216--68252
13
2.7
14
84
15
51
0
10
5
83
0.79
68528--68573
20
2.3
20
88
7
67
8
15
19
56
1.65
70514--70547
17
1.9
18
88
5
52
55
0
2
41
1.15
70649--70689
2
20.5
2
94
0
73
53
0
0
46
1.00
71013--71039
2
13.5
2
100
0
54
51
48
0
0
1.00
71031--71281
136
1.8
136
98
0
484
41
14
10
33
1.80
76010--76060
27
1.9
26
84
4
66
25
3
0
70
1.04
79858--79959
31
3.3
31
80
0
105
17
21
27
33
1.96
79909--80011
53
1.9
53
86
0
143
15
21
27
35
1.93
81376--81445
28
2.4
29
90
4
106
37
12
10
40
1.77
82687--82731
23
2.0
23
82
8
56
71
0
2
26
0.98
82689--82746
18
3.4
18
71
23
63
67
0
3
29
1.07
82690--82743
17
3.3
17
68
17
51
68
0
3
27
1.06
83407--83482
39
1.9
39
91
0
125
38
18
17
26
1.92
86221--86619
200
2.0
199
93
0
672
49
6
7
35
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87164--87198
12
2.8
13
82
8
54
68
0
5
25
1.11
87904--87938
3
11.7
3
100
0
70
68
0
0
31
0.90

Tables:   1

The End!