Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015498.1 Corchorus capsularis cultivar CVL-1 contig15519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42125

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12451--12484
2
17.0
2
100
0
68
50
0
0
50
1.00
12484--12553
20
3.8
20
72
27
75
70
4
8
17
1.29
12490--12570
35
2.2
37
91
6
130
72
2
11
13
1.21
12512--12559
23
2.1
23
84
0
60
70
2
10
16
1.24
13001--13057
22
2.6
21
76
17
53
15
10
26
47
1.78
13736--13762
10
2.7
10
100
0
54
92
0
7
0
0.38
13822--13933
52
2.1
53
83
3
145
37
13
9
39
1.78
14674--14706
16
2.1
16
94
0
57
54
6
30
9
1.56
15726--15751
11
2.4
11
100
0
52
26
30
19
23
1.98
15990--16051
31
2.0
31
87
0
88
50
3
6
40
1.44
26650--26698
24
2.1
23
81
11
55
55
0
8
36
1.30
30359--30383
13
1.9
13
100
0
50
16
0
0
84
0.63
33440--33493
16
3.4
15
80
10
54
44
29
14
11
1.80
36928--36965
2
19.0
2
94
0
67
50
0
2
47
1.15
37028--37087
16
3.8
16
86
4
86
6
13
38
41
1.70
37028--37087
31
1.9
31
93
0
102
6
13
38
41
1.70
37075--37140
6
11.5
6
80
9
75
0
21
50
28
1.49
37096--37138
11
3.8
11
82
17
52
0
23
53
23
1.46
37096--37138
17
2.5
17
92
0
68
0
23
53
23
1.46
37884--37926
16
2.7
15
86
10
59
6
16
44
32
1.74
37975--38000
10
2.6
10
100
0
52
19
19
38
23
1.93
38712--38748
13
2.8
13
91
0
65
35
8
40
16
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39013--39044
16
2.0
16
93
0
55
18
21
12
46
1.82
42036--42125
2
45.5
2
97
2
173
48
0
51
0
1.00

Tables:   1

The End!