Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015499.1 Corchorus capsularis cultivar CVL-1 contig15520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3429
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36


Found at i:58 original size:7 final size:7

Alignment explanation


    Indices: 46--83  Score: 58
    Period size: 7  Copynumber: 5.4  Consensus size: 7

         36 GCTTACTCTC

                   
         46 TTCTTTT
          1 TTCTTTT

                   
         53 TTCTTTT
          1 TTCTTTT

                   
         60 TTCTTTT
          1 TTCTTTT

              *    
         67 TTTTTTT
          1 TTCTTTT

               *   
         74 TTCATTT
          1 TTCTTTT

               
         81 TTC
          1 TTC

         84 CCTTTTTAGG


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84


Consensus pattern (7 bp):   
TTCTTTT

Found at i:89 original size:21 final size:21

Alignment explanation


    Indices: 49--90  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         39 TACTCTCTTC

                   *      **     
         49 TTTTTTCTTTTTTCTTTTTTT
          1 TTTTTTCATTTTTCCCTTTTT

                                 
         70 TTTTTTCATTTTTCCCTTTTT
          1 TTTTTTCATTTTTCCCTTTTT

         91 AGGCCTATGG


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.02, C:0.14, G:0.00, T:0.83


Consensus pattern (21 bp):   
TTTTTTCATTTTTCCCTTTTT
Done.