genome.fa.s15500.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015500.1 Corchorus capsularis cultivar CVL-1 contig15521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17870

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958--1062	16	6.6	16	81	7	115	26	16	27	29	1.97
958--1064	31	3.4	31	83	10	135	26	15	27	30	1.96
986--1064	15	4.9	17	75	14	78	26	13	26	32	1.94
935--1059	49	2.6	47	85	3	151	24	17	28	29	1.97
1459--1492	1	34.0	1	100	0	68	0	0	0	100	0.00
1932--1984	25	2.1	26	86	10	74	39	0	0	60	0.97
2570--2638	24	2.9	24	87	8	104	8	34	31	24	1.86
2647--2674	13	2.2	13	100	0	56	46	7	17	28	1.75
2674--2735	32	1.9	32	96	0	115	19	19	24	37	1.94
4231--4265	17	2.1	17	88	0	52	48	14	14	22	1.79
5045--5162	27	4.3	27	89	2	182	21	16	41	20	1.90
5041--5162	55	2.3	54	87	4	183	21	16	42	19	1.89
6384--6449	21	3.3	21	66	12	66	51	19	21	7	1.71
6674--6722	11	4.7	11	73	21	52	59	0	38	2	1.09
6547--6705	76	2.1	75	83	6	196	49	1	31	16	1.57
6665--6723	18	3.4	17	77	13	59	59	0	38	1	1.08
8347--8404	25	2.3	25	100	0	116	41	18	8	31	1.81
10408--10495	43	2.0	43	93	0	149	38	20	6	34	1.79
10451--10557	56	1.9	56	96	0	196	37	17	5	39	1.74
10507--10592	35	2.5	35	94	0	145	37	17	6	38	1.77
10408--10788	97	3.9	92	89	7	493	37	18	6	37	1.77
10598--10782	43	4.0	43	82	14	244	37	19	7	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10644--10720	19	4.2	19	72	9	79	37	16	6	38	1.75
10751--10809	17	3.3	19	67	13	61	37	16	10	35	1.83
10735--10810	35	2.2	35	92	0	134	36	18	7	36	1.80
10912--11134	102	2.1	106	89	6	337	26	16	7	49	1.72
10971--11134	55	3.0	55	96	0	301	25	17	7	50	1.71
11022--11111	29	3.2	29	64	25	75	23	17	8	50	1.74
11956--12178	51	4.3	52	88	6	294	38	12	4	44	1.63
11956--12178	104	2.2	102	86	4	297	38	12	4	44	1.63
14132--14205	33	2.2	34	83	7	98	10	27	37	24	1.88

Tables:   1

The End!