genome.fa.s15505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015505.1 Corchorus capsularis cultivar CVL-1 contig15526, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71112

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401--454	18	2.9	18	88	5	81	57	5	0	37	1.22
1054--1089	18	2.0	18	94	0	63	47	13	33	5	1.67
7582--7804	31	6.6	32	71	24	165	46	9	18	25	1.80
7579--7765	70	2.7	70	92	0	320	45	9	18	26	1.80
7667--7963	41	7.7	40	73	13	175	45	11	17	25	1.82
7722--7804	32	2.6	33	88	7	127	46	8	19	25	1.77
7765--7963	41	4.8	42	77	7	190	44	12	17	26	1.83
7772--7932	83	1.9	83	82	7	202	44	12	18	25	1.84
8009--8286	41	6.8	41	91	0	432	46	10	20	22	1.80
8282--8516	36	6.8	35	78	13	254	42	8	21	27	1.81
8288--8507	68	3.2	68	89	5	350	41	8	22	27	1.82
9486--10016	157	3.5	151	80	8	486	33	19	14	32	1.92
9523--10015	150	3.2	147	76	10	445	34	19	14	32	1.91
15585--15915	166	2.0	167	86	1	468	30	13	16	39	1.87
16436--16502	25	2.8	24	82	8	84	35	23	0	40	1.55
16589--16632	18	2.4	18	73	0	52	54	9	0	36	1.32
16647--16672	12	2.2	12	100	0	52	69	0	0	30	0.89
16666--16692	11	2.5	11	100	0	54	92	0	7	0	0.38
17854--17895	20	2.0	21	95	4	77	28	21	19	30	1.97
17867--17971	51	2.1	51	88	0	156	20	10	19	50	1.76
17961--18111	80	1.9	80	95	0	275	31	3	23	40	1.73
29472--29552	29	2.8	28	84	7	99	25	23	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31233--31404	88	2.0	88	91	2	283	27	32	14	25	1.95
42380--42513	67	2.0	67	98	0	259	26	17	11	44	1.83
44647--44686	10	3.7	12	75	25	52	22	5	5	67	1.30
44655--44694	20	2.0	20	90	0	62	17	5	10	67	1.37
46193--46226	12	2.7	13	90	4	52	20	5	8	64	1.43
46223--46249	6	4.5	6	100	0	54	29	0	14	55	1.40
46536--46612	36	2.2	36	88	6	113	32	12	6	48	1.67
46635--46711	38	2.1	36	83	9	93	28	10	2	58	1.45
53297--53330	12	2.7	13	90	4	52	20	5	8	64	1.43
53327--53353	6	4.5	6	100	0	54	29	0	14	55	1.40
54554--54667	44	2.7	41	75	12	124	47	8	18	25	1.77
54622--54857	71	3.3	71	90	0	348	40	9	24	25	1.85
54860--55213	42	8.5	42	93	1	581	38	7	23	29	1.83
54860--55295	83	5.3	84	88	2	591	39	8	22	29	1.84
54860--55213	166	2.1	166	96	0	654	38	7	23	29	1.83
54860--55307	42	10.8	40	88	4	511	39	8	22	29	1.84
55302--55450	37	4.1	36	80	10	185	44	10	18	26	1.82
55310--55785	73	6.5	73	72	8	223	45	10	18	25	1.81
55545--55783	36	6.6	36	90	2	343	46	8	18	26	1.78
55544--55783	73	3.3	72	91	1	381	46	8	18	26	1.78
55545--55783	109	2.2	109	90	2	390	46	8	18	26	1.78
55797--55967	41	4.3	40	80	10	208	44	11	20	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55975--56073	36	2.8	36	81	9	105	51	11	11	26	1.70
56083--56451	37	10.1	37	87	3	466	39	7	29	23	1.83
56148--56488	111	3.1	108	86	5	429	38	7	30	23	1.83
56466--56607	36	3.9	36	93	0	230	38	9	23	28	1.87
56466--56607	73	2.0	73	92	1	241	38	9	23	28	1.87

Tables:   1

The End!