Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015508.1 Corchorus capsularis cultivar CVL-1 contig15529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13394

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
216--705
20
23.2
22
67
15
126
20
20
4
54
1.61
216--323
44
2.5
42
86
3
153
21
17
6
54
1.65
216--348
42
3.1
42
82
6
108
21
19
6
53
1.66
292--437
64
2.3
63
80
13
158
18
21
4
55
1.59
398--493
7
13.7
7
69
12
54
19
21
3
55
1.57
398--447
14
3.6
14
78
10
66
18
24
4
54
1.61
421--699
43
6.6
43
77
11
249
21
19
3
54
1.59
421--661
65
3.8
64
77
9
219
21
19
3
55
1.59
421--699
85
3.3
82
76
13
228
21
19
3
54
1.59
612--733
35
3.4
35
73
19
97
20
21
4
54
1.61
694--754
27
2.2
28
85
5
79
21
19
6
52
1.68
721--787
35
1.9
35
87
0
98
22
17
4
55
1.60
862--993
26
5.0
25
75
17
133
16
18
6
57
1.61
861--994
53
2.5
53
91
2
216
16
19
7
56
1.63
861--989
27
4.9
25
78
15
136
16
20
6
56
1.62
4150--4194
17
2.6
17
89
0
63
57
2
15
24
1.49
5860--5897
17
2.1
19
85
9
53
0
15
13
71
1.16
8489--8533
16
2.8
16
82
3
54
71
2
4
22
1.15

Tables:   1

The End!