Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015512.1 Corchorus capsularis cultivar CVL-1 contig15533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34


Found at i:449 original size:17 final size:17

Alignment explanation


    Indices: 424--457  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        414 CACCCTTCTT

                             
        424 GAAAATTCAAAAATTCA
          1 GAAAATTCAAAAATTCA

                *            
        441 GAAACTTCAAAAATTCA
          1 GAAAATTCAAAAATTCA

        458 TAGCCGATTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.56, C:0.15, G:0.06, T:0.24


Consensus pattern (17 bp):   
GAAAATTCAAAAATTCA
Done.