Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015513.1 Corchorus capsularis cultivar CVL-1 contig15534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1990
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:943 original size:8 final size:8

Alignment explanation


    Indices: 932--965  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        922 TTGAAAAAAA

                    
        932 AAAAATTC
          1 AAAAATTC

                    
        940 AAAAATTC
          1 AAAAATTC

                 *   
        948 AGAAACTTC
          1 A-AAAATTC

                    
        957 AAAAATTC
          1 AAAAATTC

             
        965 A
          1 A

        966 TAGCCGATTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24


Consensus pattern (8 bp):   
AAAAATTC

Found at i:1054 original size:5 final size:5

Alignment explanation


    Indices: 1044--1070  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       1034 ATCGAAAAAT

                                            
       1044 ATAAA ATAAA ATAAA ATAAA ATAAA AT
          1 ATAAA ATAAA ATAAA ATAAA ATAAA AT

       1071 TTTCGACCAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22


Consensus pattern (5 bp):   
ATAAA

Done.