Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015516.1 Corchorus capsularis cultivar CVL-1 contig15537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22816

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1348--1386
20
1.9
20
84
5
51
28
2
0
69
1.02
1787--1896
22
5.0
22
77
16
86
35
8
20
36
1.82
1794--1915
44
2.8
43
78
9
113
37
7
18
36
1.79
1801--1913
22
5.2
20
80
13
100
38
7
18
36
1.78
2077--2133
23
2.5
22
75
5
60
45
7
12
35
1.69
1860--2425
298
1.9
296
90
2
902
38
7
17
36
1.79
2347--2428
22
3.7
22
73
11
69
47
4
13
34
1.64
2373--2498
22
5.7
21
70
9
81
44
7
12
34
1.72
2531--2612
22
3.5
22
79
12
85
40
9
14
35
1.79
2853--2932
23
3.5
22
79
5
88
40
5
15
40
1.68
2796--3130
22
15.3
22
70
10
141
37
10
16
35
1.83
3395--3557
31
5.5
31
74
12
137
32
24
23
19
1.98
5363--5818
169
2.7
166
84
4
621
29
14
17
39
1.88
7115--7160
21
2.4
19
85
10
58
36
26
17
19
1.94
7081--7181
51
2.0
52
86
2
141
33
26
20
18
1.96
7133--7227
30
3.2
30
84
0
118
31
27
22
18
1.97
7133--7239
30
3.6
32
78
10
79
32
26
22
18
1.97
8378--8534
78
2.0
78
97
0
296
35
17
14
33
1.90
8959--8992
2
17.0
2
100
0
68
50
0
0
50
1.00
9192--9221
15
2.0
15
100
0
60
66
26
6
0
1.16
10392--10418
14
1.9
14
100
0
54
44
14
7
33
1.73
20586--20649
29
2.1
31
91
5
105
28
20
4
46
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21108--21161
25
2.2
25
86
6
74
40
5
5
48
1.50
21097--21276
96
1.9
96
87
2
265
35
7
3
53
1.47
21198--21263
27
2.4
27
85
7
80
43
6
0
50
1.27
21337--22407
333
3.3
328
79
5
1140
32
14
16
36
1.89

Tables:   1

The End!