Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015517.1 Corchorus capsularis cultivar CVL-1 contig15538, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36731

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148--251
22
4.8
21
76
8
93
39
10
10
39
1.74
3748--4373
318
2.0
318
99
0
1243
24
15
21
38
1.92
7020--7090
18
3.9
18
81
0
70
21
25
23
29
1.99
8640--8678
6
6.5
6
91
8
62
53
15
0
30
1.42
8645--8685
19
2.2
18
86
4
55
53
14
2
29
1.54
8675--8709
13
2.7
13
86
0
52
68
8
5
17
1.35
15506--15544
6
6.5
6
91
8
62
53
15
0
30
1.42
15511--15551
19
2.2
18
86
4
55
53
14
2
29
1.54
15541--15575
13
2.7
13
95
0
61
65
8
8
17
1.44
15541--15581
13
3.2
12
86
10
55
65
9
7
17
1.44
23257--23285
3
9.7
3
100
0
58
65
0
34
0
0.93
24492--24528
18
2.1
18
100
0
74
27
40
5
27
1.78
29239--29304
32
2.1
32
100
0
132
31
9
15
43
1.77
31833--31938
52
2.0
52
96
0
194
50
16
4
29
1.65
33072--33151
41
2.0
40
87
7
117
52
20
10
17
1.72
33389--33422
2
17.0
2
100
0
68
50
0
0
50
1.00
33718--34151
215
2.0
215
91
1
710
23
26
19
30
1.98
35731--35755
13
1.9
13
100
0
50
40
0
16
44
1.47
36696--36731
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!