Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015518.1 Corchorus capsularis cultivar CVL-1 contig15539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68787
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Warning! 2 characters in sequence are not A, C, G, or T
Found at i:4165 original size:9 final size:9
Alignment explanation
Indices: 4146--4189 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
4136 ATTTAAAAAC
4146 ATATATAAT
1 ATATATAAT
4155 ATAT-T-AT
1 ATATATAAT
4162 ATATATAAT
1 ATATATAAT
*
4171 ATATATAAA
1 ATATATAAT
4180 ATCATATAAT
1 AT-ATATAAT
4190 CGGGTTCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
7 6 0.20
8 2 0.07
9 16 0.53
10 6 0.20
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (9 bp):
ATATATAAT
Found at i:5895 original size:6 final size:6
Alignment explanation
Indices: 5886--5920 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
5876 TGTGTGTGTG
*
5886 TATATA TATATC TATATC TATATC TATATC TATAT
1 TATATC TATATC TATATC TATATC TATATC TATAT
5921 ATAATCAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (6 bp):
TATATC
Found at i:19229 original size:16 final size:15
Alignment explanation
Indices: 19199--19248 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
19189 TTGTTGTTTC
*
19199 TTTCATTTTTGCTTTAT
1 TTTCCTTTTT-CTTT-T
19216 TTTCCTTTTTCTTTT
1 TTTCCTTTTTCTTTT
*
19231 TCTTCCTCTTTCTTTT
1 T-TTCCTTTTTCTTTT
19247 TT
1 TT
19249 CGTTTTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 3 0.10
16 18 0.60
17 9 0.30
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTCCTTTTTCTTTT
Found at i:22950 original size:18 final size:17
Alignment explanation
Indices: 22927--22973 Score: 78
Period size: 18 Copynumber: 2.8 Consensus size: 17
22917 CGGAGAGTGA
22927 GTTTAGTTTATTTATTT
1 GTTTAGTTTATTTATTT
22944 GGTTTAGTTTATTTATTT
1 -GTTTAGTTTATTTATTT
22962 GTTT-GTTTATTT
1 GTTTAGTTTATTT
22974 GGTAGTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.28
17 4 0.14
18 17 0.59
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (17 bp):
GTTTAGTTTATTTATTT
Found at i:23179 original size:75 final size:75
Alignment explanation
Indices: 23062--23214 Score: 279
Period size: 75 Copynumber: 2.0 Consensus size: 75
23052 AATTTATTCC
* *
23062 AATTCTAATGAGATTCACTTGTACCACTCAAAAAAAATTTATTATCAAAATTTACCATAAACATA
1 AATTCTAATGAGATTCACTTGTACCACTAAAAAAAAAATTATTATCAAAATTTACCATAAACATA
23127 CTTTAAAAAA
66 CTTTAAAAAA
23137 AATTCTAATGAGATTCACTTGTACCACTAAAAAAAAAATTATTATCAAAATTTACCATAAACATA
1 AATTCTAATGAGATTCACTTGTACCACTAAAAAAAAAATTATTATCAAAATTTACCATAAACATA
*
23202 CTTTTAAAAA
66 CTTTAAAAAA
23212 AAT
1 AAT
23215 GGTTGAAACT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (75 bp):
AATTCTAATGAGATTCACTTGTACCACTAAAAAAAAAATTATTATCAAAATTTACCATAAACATA
CTTTAAAAAA
Found at i:26630 original size:35 final size:32
Alignment explanation
Indices: 26591--26654 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 32
26581 TATAATAATC
*
26591 AAGTTCTTAATATTGATTAATTTTTTTTTAGGGAA
1 AAGTTCTT-A-ATTGATT-ATTATTTTTTAGGGAA
26626 AAGTTCTTAATTGATTATTATTTTTTAGG
1 AAGTTCTTAATTGATTATTATTTTTTAGG
26655 ATTTGCATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 12 0.43
33 7 0.25
34 1 0.04
35 8 0.29
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (32 bp):
AAGTTCTTAATTGATTATTATTTTTTAGGGAA
Found at i:27094 original size:13 final size:13
Alignment explanation
Indices: 27076--27101 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27066 TGATGCTAAT
27076 ATAATTTAAACCC
1 ATAATTTAAACCC
27089 ATAATTTAAACCC
1 ATAATTTAAACCC
27102 TATTTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
ATAATTTAAACCC
Found at i:32506 original size:29 final size:29
Alignment explanation
Indices: 32454--32511 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 29
32444 TTTGACCATT
32454 ATTTATAAAAACAAATATGTAAAA-TTTA
1 ATTTATAAAAACAAATATGTAAAAGTTTA
32482 ATTT-TAAAAA-AATATATGCTAAAAAGTTTA
1 ATTTATAAAAACAA-ATATG-T-AAAAGTTTA
32512 TAAGTGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
26 2 0.08
27 11 0.42
28 5 0.19
29 4 0.15
30 4 0.15
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.36
Consensus pattern (29 bp):
ATTTATAAAAACAAATATGTAAAAGTTTA
Found at i:40191 original size:3 final size:3
Alignment explanation
Indices: 40183--40209 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
40173 GAGAGATGAC
40183 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
40210 AAAAGGAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:40502 original size:6 final size:6
Alignment explanation
Indices: 40471--40501 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
40461 ACAAAACCCT
*
40471 TTTCTC TTTCTC TTTCTC TTTCTC TCTCTC T
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTCTC T
40502 CACTTACTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTCTC
Found at i:41163 original size:13 final size:14
Alignment explanation
Indices: 41145--41175 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
41135 TTTTTATTTT
41145 AAATAAAAATAAA-
1 AAATAAAAATAAAG
41158 AAATAAAAATAAAG
1 AAATAAAAATAAAG
41172 AAAT
1 AAAT
41176 GAATTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (14 bp):
AAATAAAAATAAAG
Found at i:43994 original size:29 final size:30
Alignment explanation
Indices: 43946--44007 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
43936 TGGGGTGCAT
* * *
43946 ATTATTTGTAAATTATAGTTTATGGTACAA
1 ATTATTTGAAAATTAAAGTTTAAGGTACAA
*
43976 ATTATTT-AAAATTAAAGTTTAAGGTCCAA
1 ATTATTTGAAAATTAAAGTTTAAGGTACAA
44005 ATT
1 ATT
44008 GGCCCTTTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.44
Consensus pattern (30 bp):
ATTATTTGAAAATTAAAGTTTAAGGTACAA
Found at i:46875 original size:7 final size:7
Alignment explanation
Indices: 46859--46897 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
46849 CAAAATTTAG
46859 TTTT-AT
1 TTTTAAT
46865 TTTTAAT
1 TTTTAAT
46872 TTTTAAT
1 TTTTAAT
46879 TTTTAAT
1 TTTTAAT
46886 TTTTAAT
1 TTTTAAT
46893 TTTTA
1 TTTTA
46898 TCTTGGTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.12
7 28 0.88
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTAAT
Found at i:48450 original size:15 final size:15
Alignment explanation
Indices: 48430--48484 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
48420 AAAGCACGTG
48430 AGCAGCAGCAACAAC
1 AGCAGCAGCAACAAC
*
48445 AGCAGCAGCAGCAAC
1 AGCAGCAGCAACAAC
* * **
48460 CGCAACAGCCTCAAC
1 AGCAGCAGCAACAAC
*
48475 ATCAGCAGCA
1 AGCAGCAGCA
48485 GCAGCAACAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.40, C:0.36, G:0.20, T:0.04
Consensus pattern (15 bp):
AGCAGCAGCAACAAC
Found at i:48544 original size:3 final size:3
Alignment explanation
Indices: 48536--48616 Score: 63
Period size: 3 Copynumber: 27.0 Consensus size: 3
48526 AGAGGCATGC
* * * * * * * *
48536 ACA ACA ACA ACA GCA GCA GCA ACA GCA ACA ACA GCA ACA GCA GCA GCA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
* * *
48584 ACA GCA GCA ACA ACA ACA ACA ACC ACA ACA ACA
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA
48617 GCCCCCACAG
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.53, C:0.35, G:0.12, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:48548 original size:21 final size:21
Alignment explanation
Indices: 48536--48606 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
48526 AGAGGCATGC
48536 ACAACAACAACAGCAGCAGCA
1 ACAACAACAACAGCAGCAGCA
* *
48557 ACAGCAACAACAGCAACAGCA
1 ACAACAACAACAGCAGCAGCA
* * * * *
48578 GCAGCAACAGCAGCAACAACA
1 ACAACAACAACAGCAGCAGCA
48599 ACAACAAC
1 ACAACAAC
48607 CACAACAACA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.52, C:0.34, G:0.14, T:0.00
Consensus pattern (21 bp):
ACAACAACAACAGCAGCAGCA
Found at i:48567 original size:9 final size:9
Alignment explanation
Indices: 48536--48618 Score: 78
Period size: 9 Copynumber: 8.9 Consensus size: 9
48526 AGAGGCATGC
*
48536 ACAACAACA
1 ACAACAGCA
*
48545 ACAGCAGCA
1 ACAACAGCA
*
48554 GCAACAGCA
1 ACAACAGCA
48563 ACAACAGCA
1 ACAACAGCA
48572 ACAGCAGCAGCA
1 ACA--A-CAGCA
*
48584 ACAGCAGCA
1 ACAACAGCA
*
48593 ACAACAACA
1 ACAACAGCA
48602 ACAACCA-CA
1 ACAA-CAGCA
48611 ACAACAGC
1 ACAACAGC
48619 CCCCACAGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
8 2 0.03
9 48 0.79
10 2 0.03
11 1 0.02
12 8 0.13
ACGTcount: A:0.52, C:0.35, G:0.13, T:0.00
Consensus pattern (9 bp):
ACAACAGCA
Found at i:48644 original size:18 final size:18
Alignment explanation
Indices: 48615--48663 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
48605 ACCACAACAA
* * *
48615 CAGCCCCCACAGTCTCAG
1 CAGCCCCAACAGCCGCAG
*
48633 CCGCCCCAACAGCCGCAG
1 CAGCCCCAACAGCCGCAG
*
48651 CAGCCCCAGCAGC
1 CAGCCCCAACAGC
48664 GAAGGGAACC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.53, G:0.20, T:0.04
Consensus pattern (18 bp):
CAGCCCCAACAGCCGCAG
Found at i:48872 original size:1 final size:1
Alignment explanation
Indices: 48868--48892 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
48858 AATGTGTTCC
48868 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
48893 AAAGTTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:57602 original size:32 final size:32
Alignment explanation
Indices: 57487--57700 Score: 284
Period size: 32 Copynumber: 6.6 Consensus size: 32
57477 AGCCACGCGG
* * *
57487 AGCCTCCCCACTAAGACGGCTCTGCCACGGCGG
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGC-T
* * * *
57520 AGCCTCCACACTAGGGCGGCTCTGCCACGGCGG
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGC-T
* * *
57553 AGCCTCCACACTAGGACGACTCTGCCACGGCT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
*
57585 AGCCGCCTCACTAGGACGGCTCTGCCACGGCT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
* *
57617 AGCCGCCCCACTAGGACGGCTTTGCCATGGCT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
57649 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
1 AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
*
57681 AGCCGCCCCACTAGGGCGGC
1 AGCCGCCCCACTAGGACGGC
57701 AAGGTTTTTT
Statistics
Matches: 166, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
32 107 0.64
33 59 0.36
ACGTcount: A:0.17, C:0.41, G:0.29, T:0.14
Consensus pattern (32 bp):
AGCCGCCCCACTAGGACGGCTCTGCCACGGCT
Found at i:57814 original size:33 final size:32
Alignment explanation
Indices: 57755--57881 Score: 137
Period size: 33 Copynumber: 3.9 Consensus size: 32
57745 TAGTACCGGT
* **
57755 GCCGCCCCAGGGGGCGGTCTATCCATGGGAGA
1 GCCGCCCCAGGGGGCGGCCTGGCCATGGGAGA
*
57787 GCCGCCCCAGGGAGGCGGCCTGGCCATGGGAGT
1 GCCGCCCCAGGG-GGCGGCCTGGCCATGGGAGA
* * ***
57820 GCCACCCCAGGAGGGCGGCTTGGCCATGGCTCA
1 GCCGCCCCAGG-GGGCGGCCTGGCCATGGGAGA
*
57853 GCCGCCCCAAGGGGACGGCCTGGCCATGG
1 GCCGCCCC-AGGGGGCGGCCTGGCCATGG
57882 CAAGCCGTCC
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
32 12 0.15
33 63 0.80
34 4 0.05
ACGTcount: A:0.14, C:0.35, G:0.41, T:0.10
Consensus pattern (32 bp):
GCCGCCCCAGGGGGCGGCCTGGCCATGGGAGA
Found at i:57930 original size:33 final size:32
Alignment explanation
Indices: 57843--57971 Score: 100
Period size: 33 Copynumber: 3.9 Consensus size: 32
57833 GGCGGCTTGG
*** * **
57843 CCATGGCTCAGCCGCCCCAAGGGGACGGCCTGG
1 CCATGGCTCAGCCGCCCCCCTGGG-CGGCATTA
* *
57876 CCATGGC-AAGCCGTCCCCCTGGTGCGGCATTA
1 CCATGGCTCAGCCGCCCCCCTGG-GCGGCATTA
* **
57908 CCATGGC-CAGGCCGCTCCCCTGGGGCGGCCCTA
1 CCATGGCTCA-GCCGCCCCCCT-GGGCGGCATTA
57941 CCATGGCTCAGCCGCCCCCCTAGGGCGGCAT
1 CCATGGCTCAGCCGCCCCCCT-GGGCGGCAT
57972 GAGCAATTTT
Statistics
Matches: 75, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
32 23 0.31
33 48 0.64
34 4 0.05
ACGTcount: A:0.13, C:0.42, G:0.32, T:0.13
Consensus pattern (32 bp):
CCATGGCTCAGCCGCCCCCCTGGGCGGCATTA
Found at i:63861 original size:40 final size:38
Alignment explanation
Indices: 63795--63869 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 38
63785 AATAAGATGG
63795 TTTACCAAAAAGAAACAATCATTGAAACAAACTTTCAA
1 TTTACCAAAAAGAAACAATCATTGAAACAAACTTTCAA
63833 TTTACCAAAAAGGAAA-ACATCGATTGAAACAAACTTT
1 TTTACCAAAAA-GAAACA-ATC-ATTGAAACAAACTTT
63870 TAGACATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
38 12 0.35
39 7 0.21
40 15 0.44
ACGTcount: A:0.51, C:0.17, G:0.08, T:0.24
Consensus pattern (38 bp):
TTTACCAAAAAGAAACAATCATTGAAACAAACTTTCAA
Found at i:66253 original size:24 final size:24
Alignment explanation
Indices: 66226--66272 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
66216 GATCAACATT
66226 AAGGTTTCACGAAAATTTTCAATC
1 AAGGTTTCACGAAAATTTTCAATC
*
66250 AAGGTTTCACGAGAATTTTCAAT
1 AAGGTTTCACGAAAATTTTCAAT
66273 TGGTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (24 bp):
AAGGTTTCACGAAAATTTTCAATC
Found at i:68144 original size:2 final size:2
Alignment explanation
Indices: 68137--68164 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68127 GAGTATAAAG
68137 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68165 NTAGGCTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68327 original size:15 final size:15
Alignment explanation
Indices: 68307--68389 Score: 62
Period size: 15 Copynumber: 5.4 Consensus size: 15
68297 TTTTTGGACG
68307 GTCCGTTAGTCACGT
1 GTCCGTTAGTCACGT
*
68322 GTCCGTTAGCCACGT
1 GTCCGTTAGTCACGT
* * *
68337 GCCGTCACGTGATTAACG-
1 ---GTC-CGTTAGTCACGT
*
68355 GTCCGTTAGTCACAT
1 GTCCGTTAGTCACGT
*
68370 GTCCGTTAGCCACGT
1 GTCCGTTAGTCACGT
68385 G-CCGT
1 GTCCGT
68390 CACGTGATTA
Statistics
Matches: 52, Mismatches: 11, Indels: 11
0.70 0.15 0.15
Matches are distributed among these distances:
14 11 0.21
15 31 0.60
18 3 0.06
19 7 0.13
ACGTcount: A:0.16, C:0.30, G:0.27, T:0.28
Consensus pattern (15 bp):
GTCCGTTAGTCACGT
Found at i:68375 original size:48 final size:48
Alignment explanation
Indices: 68304--68405 Score: 195
Period size: 48 Copynumber: 2.1 Consensus size: 48
68294 TCATTTTTGG
*
68304 ACGGTCCGTTAGTCACGTGTCCGTTAGCCACGTGCCGTCACGTGATTA
1 ACGGTCCGTTAGTCACATGTCCGTTAGCCACGTGCCGTCACGTGATTA
68352 ACGGTCCGTTAGTCACATGTCCGTTAGCCACGTGCCGTCACGTGATTA
1 ACGGTCCGTTAGTCACATGTCCGTTAGCCACGTGCCGTCACGTGATTA
68400 ACGGTC
1 ACGGTC
68406 GTCAGATTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.26
Consensus pattern (48 bp):
ACGGTCCGTTAGTCACATGTCCGTTAGCCACGTGCCGTCACGTGATTA
Done.